PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32295.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 781aa    MW: 86177.8 Da    PI: 5.9603
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32295.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.7e-106490127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                +kt+lC++f+r G C++G +C++aHg+
  KFK32295.1 64 FKTSLCSYFRREGNCSHGTTCRYAHGE 90
                69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-135895IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-86195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3476391IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-66390IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-76490IPR000571Zinc finger, CCCH-type
CDDcd005900.00579146211No hitNo description
Gene3DG3DSA:3.30.70.3301.9E-4149211IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168746.992236781IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533355.85E-46239264IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.85E-46296435IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.85E-46473592IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.6E-65486592IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138477.7E-11536622IPR025714Methyltransferase domain
CDDcd024402.27E-6538592No hitNo description
Gene3DG3DSA:3.40.50.1501.6E-65655719IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.85E-46667720IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059585.7E-8670715IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300675707IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.6E-65756781IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.85E-46765780IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MASSSMDQIP SAAETLTSQL PSDNTPTDAV SSIGDIPVGE KRKRADEETN LEWSDPNLTP  60
SPWFKTSLCS YFRREGNCSH GTTCRYAHGE AELRQKPDNT WDPTSERGKK AKMSETAEAE  120
EEEVLFTEDM MDGEGGCGDD LSLSKCLLHL PRKWLSDDLK MFVRQLGVEF KFAKKRRGMT  180
VGFLTFENAQ QLHSGLQTLE GKAVCNKNLK IADVLPRTTD KNETKYLVKI KSAREAVTPL  240
ADLSYADQLE QKKASIMQWL KKLTRNARKA CPNGKSLPEW VLQSRDIGGL SCNLEGIIES  300
PVRNGYRNKC EFSAGYSVEG KVTVGFLLGN FSAGVTAVEE PVDCPNISKI SCRYASIFQT  360
FLENSRLPVW NKYKNCGFWR QLTVREGRKP GVFSNNEDAE TSIAEVMLIV QVCTTGTDEA  420
EVATEFEAMA KAFAEGARAS NPTLPLTVLL VQDHQGISNV AAPDCPLRLL PIPMSDNGAN  480
QDQPTNVLAE ARIHDHINNL RFSISPTAFF QVNTGAAEKL YSLAGDWADL GPDTLLFDVC  540
CGTGTIGLTL AHRVGMVIGI EMNASAVSDA ERNAKINGLS NCKFICSKAE DVMSSLLKEY  600
LDVSQMEEAK PLSKANDDPD KQISSTEAMS NVDDQSLPTP NIQEELQNNE QKDSSSAEPE  660
RSTKLQFKNV VAIVDPPRPG LHPDVIKALR THPRLKTLVY ISCNPETLVA NAIELCTPSF  720
LEKAEQGNHG FRKQRRMGTA ASARHRAKKM PASEPFRPVK AMAVDIFPHT DHCEMIMLLK  780
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A6e-2022559959371Uncharacterized RNA methyltransferase SP_1029
5xj2_A6e-2022559959371Uncharacterized RNA methyltransferase SP_1029
5xj2_B6e-2022559959371Uncharacterized RNA methyltransferase SP_1029
5xj2_C6e-2022559959371Uncharacterized RNA methyltransferase SP_1029
5xj2_D6e-2022559959371Uncharacterized RNA methyltransferase SP_1029
5zq0_A6e-2022559960372Uncharacterized RNA methyltransferase SP_1029
5zq1_A5e-2022559959371Uncharacterized RNA methyltransferase SP_1029
5zq8_A6e-2022559959371Uncharacterized RNA methyltransferase SP_1029
5zq8_B6e-2022559959371Uncharacterized RNA methyltransferase SP_1029
5zth_A6e-2022559960372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409870.20.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A087GQZ30.0A0A087GQZ3_ARAAL; Uncharacterized protein
STRINGA0A087GQZ30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120031516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]