PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32333.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 278aa    MW: 30178.8 Da    PI: 8.2902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32333.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062110132123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  KFK32333.1 110 YECKTCNRTFPSFQALGGHRASH 132
                 99**********99999998887 PP
2zf-C2H213.40.00023183205123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  KFK32333.1 183 HECSICGSEFTSGQALGGHMRRH 205
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-13109134IPR007087Zinc finger, C2H2
SuperFamilySSF576673.92E-5109136No hitNo description
PROSITE profilePS5015710.221110137IPR007087Zinc finger, C2H2
SMARTSM003550.052110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576674.93E-6180208No hitNo description
Gene3DG3DSA:3.30.160.609.6E-4181205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11182206IPR007087Zinc finger, C2H2
SMARTSM003550.019183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MMGQDEVGSD QSTQIIKGKR TKRQRSSSST FVVAVTSTSS SAGGGGRAVS DEYNSVVSSP  60
VTTDCTEEEE DMAICLIMLA RGLVPSPDLK NSRKTDKILH QKISSSFYVY ECKTCNRTFP  120
SFQALGGHRA SHKKPRVSEK TRSPLMQPKS SGSEEGQNSH FKVSGSALAS QASNMFSKAN  180
KVHECSICGS EFTSGQALGG HMRRHRTATT AVSPTGAAEI SRNSTEEEIV ENLGRSMEQR  240
KYLPLDLNLP APEDDLRESS KFQGIVFSVT PALIDCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32333.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180387.21e-156C2H2-type zinc finger family protein
RefseqXP_024004277.11e-156zinc finger protein ZAT5
SwissprotQ681X41e-157ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A087GR310.0A0A087GR31_ARAAL; Uncharacterized protein
STRINGA0A087GR310.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-153C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]