PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32444.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 262aa    MW: 30018.2 Da    PI: 9.0416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32444.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018115136223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C  Cgk F + ++L  H+r+H
  KFK32444.1 115 RCCLCGKQFQTMHSLFGHMRRH 136
                 7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-54670No hitNo description
PROSITE profilePS501579.5984875IPR007087Zinc finger, C2H2
SMARTSM003550.524870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139120.00255068IPR007087Zinc finger, C2H2
SuperFamilySSF576673.6E-5109136No hitNo description
PROSITE profilePS501579.827114136IPR007087Zinc finger, C2H2
SMARTSM003550.1114136IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-4115138IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKRTRDDPSS GFLHQSAYED DSSSSLLSKF GEFHGEDDND SPQPQRKHFC VICNKQFNSG  60
KAYGGHVRIH SNEYGNKHGK TKKLKMKMKM KKKAKRSLVK RETDLVRADV EGKIRCCLCG  120
KQFQTMHSLF GHMRRHPDRS WKGIRPPPEL GFLDDDEMSR SMMVSSGVTD DVQEAACCLM  180
MLNYSKAIET PNSEVTSSSC FKGKVLKRKR DGEMDDKGLI VDMKIKMEIE VKVNNPRDDE  240
AKRSLGFDLN QPPYHEDHPY SY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0051687e-56AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence.
GenBankCP0026857e-56CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408603.12e-93uncharacterized protein LOC18025502
TrEMBLA0A087GRE20.0A0A087GRE2_ARAAL; Uncharacterized protein
STRINGA0A087GRE20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.18e-90C2H2 family protein