PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32621.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 980aa    MW: 110268 Da    PI: 8.5708
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32621.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.81.3e-20108193998
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    +++rl+lp +fa+e+g++k++  ++ l  ++g +W  +l    ++gr++l++GWk+FvkangLk+g++++++ ++ +++++v++++ 
  KFK32621.1 108 VDVRHCRLRLPVQFARENGINKPG--KVYLVGKDGSKWLANL-LLEGRGRMTLGDGWKSFVKANGLKTGESFTLEANW-EDTTPVLRLCA 193
                 45689**************99776..7***************.566667889***********************877.89999999986 PP
2B367.42e-21267355192
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f++ ++++d+l++grl+lp +f+ e+ ++k++  ++tl  ++g +W v l    +++r+ l+kGWk+F+kangLk+gD+++++ ++++e+++
  KFK32621.1 267 FLTLTITPDSLRHGRLRLPLQFMMENRMNKPG--EITLLGKDGAKWLVSLL-LERRERMSLGKGWKDFAKANGLKAGDSITLESIWEDETRM 355
                 778899********************989666..8***************5.55556789***********************999744433 PP
3B360.72.5e-195896731098
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +++rl+lp +f++e+g++k++  ++ l  ++g +W  +l    ++gr++l++GWk+FvkangLk+g+++ +kl++ +++ +v++++ 
  KFK32621.1 589 DVRNCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANL-LLESRGRMTLGDGWKSFVKANGLKTGESFALKLNW-EDTIPVLSLCP 673
                 5679**************99776..8***************.68888899*************************99.77768888775 PP
4B362.38.1e-20748841198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f++ ++++d+l++grl+lp +f+ e++++k++  +++l  ++g +  v l    k+gr+ l+kGWk+F+kangLk+gD+++++ ++ +++++v++++r
  KFK32621.1 748 FLTLTITPDSLRHGRLRLPLQFMMENNMNKPG--EISLLGKDGAKCLVSLL-LEKRGRMSLGKGWKDFAKANGLKTGDSITLESTW-EDTTPVLSLLR 841
                 778899********************999666..8***************5.66667889***********************666.88889998876 PP
5B352.58.9e-17887973898
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +   k + l lp +f++++g++k +  ++tl  +sg +W  +l     +g++ l++GWk+F++ang+ +g+++++++++r++++ v+k+++
  KFK32621.1 887 PEDVKDCKLHLPSQFMRTNGIIKLG--KITLLGRSGMKWFAYL--VSIDGTVALGNGWKGFCEANGVLVGESFILEFISREDTNHVFKFCS 973
                 45566788************99766..8***************..999999********************************99*99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.3E-28100195IPR003340B3 DNA binding domain
PROSITE profilePS5086314.283100195IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-21100196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-21101197IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-19103194IPR003340B3 DNA binding domain
CDDcd100171.62E-17110192No hitNo description
Gene3DG3DSA:2.40.330.101.3E-21257366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-23263363IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.0E-32267362IPR003340B3 DNA binding domain
PfamPF023621.3E-20267357IPR003340B3 DNA binding domain
CDDcd100173.16E-19267360No hitNo description
PROSITE profilePS5086315.947267362IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-22575679IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-21577675IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-26580675IPR003340B3 DNA binding domain
PROSITE profilePS5086314.466580675IPR003340B3 DNA binding domain
CDDcd100174.92E-16584673No hitNo description
PfamPF023621.6E-18586673IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-20738846IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-21743841IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-27748843IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521748843IPR003340B3 DNA binding domain
PfamPF023626.3E-19748841IPR003340B3 DNA binding domain
CDDcd100171.35E-17748841No hitNo description
SuperFamilySSF1019366.28E-19878974IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-17878974IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-13879972No hitNo description
SMARTSM010192.6E-20880975IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28880974IPR003340B3 DNA binding domain
PfamPF023621.8E-15885973IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MMFSDLKTPS DNNIGNISMI RQEASFSSND QNKIEPPRKK KVKKNNPETE AYSSFHVSAS  60
NMQTDAMYLP QDFTNSDARK RNFQKKCSPR QILSAYSSKY VTFKLAPVDV RHCRLRLPVQ  120
FARENGINKP GKVYLVGKDG SKWLANLLLE GRGRMTLGDG WKSFVKANGL KTGESFTLEA  180
NWEDTTPVLR LCAAEYSIDS REGGGCSDAS EKEPLPLEPS NRTEIVKDEN SLDKNIDENS  240
KRESRSWERE KSHLRGRDST SPSQSRFLTL TITPDSLRHG RLRLPLQFMM ENRMNKPGEI  300
TLLGKDGAKW LVSLLLERRE RMSLGKGWKD FAKANGLKAG DSITLESIWE DETRMLSLLR  360
IECSSDRRQQ SECSKSREKK SIFTEPSSGN RKSNAESNRE ENRKYPHRRR ESLAIQNRFG  420
TSTLSPEIVS YVTHDIRIGE IVVVRDEGDM MFQVSDSGPN CCQIRDALAP SNNNDQDNIG  480
SFSIKMHPHL RKEVGCPSYD QDIIELLRKK KVKTHNPGTE ADPSSDHSCF VAHATASNLH  540
TDELYLSQNV ASSDGVNRKC RKKYSPTQIT SLYSSSEKQL ATFTLAPVDV RNCRLRLPMQ  600
FTRENGINKP GKIYLLGKDG SKWLANLLLE SRGRMTLGDG WKSFVKANGL KTGESFALKL  660
NWEDTIPVLS LCPAEHSIDS KDGGGCSEAS EEECLSIEPS SGKEISNDDN DEDENRKEEN  720
SKEESRSWER EKNHLIWRDS TSSSQNRFLT LTITPDSLRH GRLRLPLQFM MENNMNKPGE  780
ISLLGKDGAK CLVSLLLEKR GRMSLGKGWK DFAKANGLKT GDSITLESTW EDTTPVLSLL  840
RIECSNDKEQ IEFSKQSLST GHSSGNKTGK AENNIEGNRI VILTLRPEDV KDCKLHLPSQ  900
FMRTNGIIKL GKITLLGRSG MKWFAYLVSI DGTVALGNGW KGFCEANGVL VGESFILEFI  960
SREDTNHVFK FCSNFGDQIH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014110.10.0B3 domain-containing protein REM-like 1 isoform X2
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A087GRW90.0A0A087GRW9_ARAAL; Uncharacterized protein
STRINGA0A087GRW90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]