PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32622.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 147aa    MW: 16677.6 Da    PI: 5.2738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32622.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.2e-135623289
                --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                 s +++++d   rsW ++l+++k s+++++++GW++F ++n  ++g  +vF+l+g+ e
  KFK32622.1  5 FSAEIVITDGGERSWALYLRFNKISDTFYISRGWRSFYDENCKRAGSLFVFRLVGNGE 62
                5789*************************************************99643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.464171IPR003340B3 DNA binding domain
CDDcd100171.03E-10168No hitNo description
SuperFamilySSF1019361.43E-12570IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-10563IPR003340B3 DNA binding domain
SMARTSM010190.0021572IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-11670IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSESFSAEIV ITDGGERSWA LYLRFNKISD TFYISRGWRS FYDENCKRAG SLFVFRLVGN  60
GEVPLLSFSP AESRGDKSCS KESLPVESIE KNYLTSRDST PPSQNRFVTL TFTHDTELNC  120
RQVLDPRWKM LQNEAVPVSG QSNTSTE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32622.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083487.11e-34PREDICTED: B3 domain-containing protein REM12-like isoform X2
SwissprotP0CAP42e-34REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A087GRX01e-104A0A087GRX0_ARAAL; Uncharacterized protein
STRINGA0A087GRX01e-105(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.19e-37B3 family protein