PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32627.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 1444aa    MW: 162516 Da    PI: 7.0667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32627.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.2e-1220941189
                HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                + ++ lv+p  f++++  g++ e + t+ l++ +s  +W+vk+  ++++    +++GW++F+ an+L+ gD+++ +++g+  
  KFK32627.1 20 FHTH-LVIPVGFFSKYiqGKSMEVEDTVELKSgSSDITWKVKM--TGQR----FSDGWEDFAVANRLQIGDVLLVRYEGDLV 94
                4445.9**********99555555568999996666*******..7777....99*********************987533 PP
2B361.41.5e-19155248398
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++++ ++l+++ l lp +f++++g+  ++  +++l d   rsW v l+++++s+++++++GW++F+++ng ++g f++Fkl+g s+++lv++++ 
  KFK32627.1 155 VATVTTSSLRTDTLHLPQHFTSSNGLTRKC-CKIVLLDGGVRSWAVDLSFNNSSDTFYISQGWRNFCDENGQEAGGFFMFKLVG-SGETLVLSFCP 248
                 4566788899999***********999655.6**************************************************99.77778998886 PP
3B351.71.6e-16338430199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ ++p+d+ +   l+lpk+fa+e++ +k++   + l  ++g +W  +l +r ++g++ l+kGWk+Fvkang+k g   ++kl++ +++++v++++++
  KFK32627.1 338 FVTFTLPPDYVRIEKLSLPKQFASENSVNKPG--IIYLVGKDGTKWLTNL-HRDTKGTMSLGKGWKDFVKANGIKKGF--TLKLIW-EDTTPVLRLCDA 430
                 67788999******************877655..8***************.78888889*****************95..667778.88899**99987 PP
4B359.75e-19496587498
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++++++ ++rl lpk f++e+ ++k++  ++tl  ++g +   kl ++k +g +vl++GWk+Fvk+ngLk+gD++++kl++ +++++v++++ 
  KFK32627.1 496 LTITPSSFIKCRLGLPKCFTKENCINKPG--MITLLGKDGIKQPTKLLFNKVKGVMVLGGGWKSFVKENGLKTGDSFTLKLIW-EDTTPVLSLCP 587
                 5688999999*************888655..8***************************************************.88889999986 PP
5B3642.3e-20731825199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ ++++++++++rl+l  +f++e++++k++  ++ l  ++g +W  +l+ r ++g++ l+kGWk+Fvka++Lk gD+++ +l++ +++ +++++fr+
  KFK32627.1 731 FVTLTITPSSFTQCRLTLAAPFVRENDMNKPG--MIYLVGKDGTKWPTNLQ-RDNKGTMSLGKGWKDFVKAHDLKLGDSFTMELIW-QDTIPMLSWFRT 825
                 788899********************999766..8***************5.55556789**************************.777799999997 PP
6B347.53.2e-15859939588
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                  +++   k ++l lp +f++++g++k +  ++tl  e+  +W+ +l    k+g++ l+kGW eF++ang+k+g+ +++++ ++ +
  KFK32627.1 859 ALTPEDVKACQLHLPSQFMKANGINKLG--KMTLLGENEMEWSGYL--LTKDGTVALGKGWDEFCEANGVKSGEPFTLEFLNSsR 939
                 45556666788************99766..8***************..9999**************************9765424 PP
7B3413.5e-139511038196
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3    1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95  
                  ffk l     + s+ l++p  f+ ++ +g + e+++ +l++  s   Wevk+  +  +++  lt+GWkeF+ a++L +gD+ vF+ ++ + f  +v+
  KFK32627.1  951 FFKPL--LPGFHSH-LTIPDAFFLKYiQGRN-EQTMAKLRSdASKIIWEVKV--EEDGQK--LTDGWKEFALAHDLGVGDIAVFRQERYMAF--HVT 1037
                  66666..5667777.***********85444.556888888588899*****..777766..***********************5544877..666 PP

                  E CS
          B3   96 v 96  
                  +
  KFK32627.1 1038 L 1038
                  5 PP
8B3642.4e-2010911177796
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3    7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                  +  +l+ + l++p +f+++++++ +++ +++l +e+g+sW++ l+ +kk g++++++GW++F++angLk+g f +Fkl++ +++++v+++
  KFK32627.1 1091 SRATLRYDTLYFPTTFTRANSLDARCG-EIVLLNEKGKSWTLALT-QKKNGSFFIRRGWRSFCRANGLKAGGFYTFKLIQ-RGGTPVLRL 1177
                  556778899************998887.****************4.666678***************************9.566677765 PP
9B3573.6e-1813531442697
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3    6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
                   ++++lk+++l lp  f++ hg+++e+  ++tl d++g  W+ +l+ +k ++r+ l +GWkeF kan +k g++v F+l++++++++v+k++
  KFK32627.1 1353 HTPNNLKKSILFLPVAFTRMHGINEET--QMTLLDKKGVNWSTNLRGEKIGDRIRLVGGWKEFFKANSVKPGESVEFELIWKEDTSCVLKFC 1442
                  578899999*************99655..7***************999999*******************************9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-158104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-149106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1389103IPR003340B3 DNA binding domain
CDDcd100173.31E-111098No hitNo description
SMARTSM010193.3E-1612103IPR003340B3 DNA binding domain
PfamPF023629.1E-82192IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-22145249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-21148251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.424153249IPR003340B3 DNA binding domain
CDDcd100178.52E-18153248No hitNo description
SMARTSM010199.2E-27154250IPR003340B3 DNA binding domain
PfamPF023625.2E-18155248IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18335437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16335427IPR015300DNA-binding pseudobarrel domain
CDDcd100176.43E-17336429No hitNo description
PfamPF023628.9E-16338430IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296338431IPR003340B3 DNA binding domain
SMARTSM010195.7E-25338431IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-22484593IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-22489591IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.224493589IPR003340B3 DNA binding domain
SMARTSM010191.9E-29493589IPR003340B3 DNA binding domain
PfamPF023621.3E-18495588IPR003340B3 DNA binding domain
CDDcd100179.94E-20497587No hitNo description
Gene3DG3DSA:2.40.330.102.9E-5655702IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-24721821IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-20729824IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-18731825IPR003340B3 DNA binding domain
CDDcd100171.17E-18731824No hitNo description
PROSITE profilePS5086314.565731826IPR003340B3 DNA binding domain
SMARTSM010191.1E-26731826IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17848938IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-17851938IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-14855941IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647855949IPR003340B3 DNA binding domain
SMARTSM010194.5E-17855947IPR003340B3 DNA binding domain
CDDcd100178.35E-11860941No hitNo description
Gene3DG3DSA:2.40.330.105.4E-219481055IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-179481049IPR015300DNA-binding pseudobarrel domain
CDDcd100173.67E-139491039No hitNo description
SMARTSM010195.3E-209511042IPR003340B3 DNA binding domain
PfamPF023623.7E-99591029IPR003340B3 DNA binding domain
PROSITE profilePS5086310.3919631042IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-1910781178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-1710841183IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.48110851181IPR003340B3 DNA binding domain
SMARTSM010191.9E-2510861181IPR003340B3 DNA binding domain
PfamPF023623.5E-1910901177IPR003340B3 DNA binding domain
CDDcd100176.13E-1710941177No hitNo description
Gene3DG3DSA:2.40.330.106.7E-412271292IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.212351318IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1913401443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-1913421443IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.77513481444IPR003340B3 DNA binding domain
SMARTSM010191.0E-1813481444IPR003340B3 DNA binding domain
CDDcd100171.39E-1613501442No hitNo description
PfamPF023621.8E-1613511443IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1444 aa     Download sequence    Send to blast
MAKSTLLRHP QFFHTLVPGF HTHLVIPVGF FSKYIQGKSM EVEDTVELKS GSSDITWKVK  60
MTGQRFSDGW EDFAVANRLQ IGDVLLVRYE GDLVFHVSDL GPNCSETRDI APPSSNNDDD  120
DDNIEFHRKK KLRKNCPEGE GEAGSSSSSD NSCFVATVTT SSLRTDTLHL PQHFTSSNGL  180
TRKCCKIVLL DGGVRSWAVD LSFNNSSDTF YISQGWRNFC DENGQEAGGF FMFKLVGSGE  240
TLVLSFCPTE SSNDRKQRDC SEASGRESIS TKVGCEEENI EVENSEDECS SMESLMEIES  300
SEDECSLVES LLEIEKTKYT PKQRFFSYSS YAPCQKRFVT FTLPPDYVRI EKLSLPKQFA  360
SENSVNKPGI IYLVGKDGTK WLTNLHRDTK GTMSLGKGWK DFVKANGIKK GFTLKLIWED  420
TTPVLRLCDA ESTIDKAQEE LSKTNETESL VIDSSNRDKI KRDENNKEES RSWDRNNNYT  480
RGKDSTPSSE NQLVTLTITP SSFIKCRLGL PKCFTKENCI NKPGMITLLG KDGIKQPTKL  540
LFNKVKGVMV LGGGWKSFVK ENGLKTGDSF TLKLIWEDTT PVLSLCPAEQ SIDKRGVCSE  600
TNQKKSFPIE PTSCKKISKD ENIKDDNSKE KNNKEENSKG ENPLMEREKT HLRGRDSTPS  660
SQKQFLTLTI TPSSFTQCRL TLPAPFVREN NMNKPGMIYL GESSSSKANE KESVSTEPRS  720
RDSSSAIQNQ FVTLTITPSS FTQCRLTLAA PFVRENDMNK PGMIYLVGKD GTKWPTNLQR  780
DNKGTMSLGK GWKDFVKAHD LKLGDSFTME LIWQDTIPML SWFRTESSSS KANEKESVSN  840
EPRSRDSSSA IQNQFVTLAL TPEDVKACQL HLPSQFMKAN GINKLGKMTL LGENEMEWSG  900
YLLTKDGTVA LGKGWDEFCE ANGVKSGEPF TLEFLNSSRD LELLKMANKH FFKPLLPGFH  960
SHLTIPDAFF LKYIQGRNEQ TMAKLRSDAS KIIWEVKVEE DGQKLTDGWK EFALAHDLGV  1020
GDIAVFRQER YMAFHVTLLG PSCCEIQYES CLDNENNLEK IEKKKKVKKN PRTRREASSS  1080
LDPSCFVANV SRATLRYDTL YFPTTFTRAN SLDARCGEIV LLNEKGKSWT LALTQKKNGS  1140
FFIRRGWRSF CRANGLKAGG FYTFKLIQRG GTPVLRLSAT ESEEESSEEG DEIESLSTES  1200
ESDEERNPEK IQRKKKVKKN PRREAESSSL DTSCFVANVS PATLRYDTLN LPRPFVRANG  1260
LDTRIGEIVL MNEKAGGFYT FKLILRGGTP VLRLLSEETD EEECSVADRI ESLSTESESD  1320
EESNQDEKSL KKRRSTWKAS SSSSQNRLVT LTHTPNNLKK SILFLPVAFT RMHGINEETQ  1380
MTLLDKKGVN WSTNLRGEKI GDRIRLVGGW KEFFKANSVK PGESVEFELI WKEDTSCVLK  1440
FCPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112111218QRKKKVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32627.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001325063.10.0B3 domain-containing protein REM13
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A087GRX50.0A0A087GRX5_ARAAL; Uncharacterized protein
STRINGA0A087GRX40.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.10.0DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]