PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32666.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 357aa    MW: 37590 Da    PI: 7.0865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32666.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11161206555
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  KFK32666.1 161 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 206
                 99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-13154210No hitNo description
PROSITE profilePS5088817.409156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16158216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9161206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMNSSLLTPP SSSSHMQTPV TTFDHEDFLD QIFSSSPWPS VVDDAHPPPT PSSDGFHGHH  60
VDSRHHQQIM MMPLSSHPQN DLVDVSTVHA LYNGISAAGS LPFHIPQGSG GGLMNQQGQK  120
QTQTQSQPQA SASTATGGTT VAPPQSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ  180
ELVPNGNKTD KASMLDEIID YVKFLQLQVK VLSMSRLGAA ASVSSQISEA GGSQGNASSA  240
VAGGNQPVAG NANESVTMTE HQVAKLMEED MGSAMQYLQG KGLCLMPISL ASAISTATCH  300
SRNPIISGAA DVRGPSSPNL SGMTVQSTTI DNGKLNGNSV THGSFVAVKD GLAISKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32666.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763700.0AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265120.0BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438414.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG90.0BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A087GS140.0A0A087GS14_ARAAL; Uncharacterized protein
STRINGA0A087GS140.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-163LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]