PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32790.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 277aa    MW: 30140.6 Da    PI: 7.4358
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32790.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18112166256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  KFK32790.1 112 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
                 788899***********************************************98 PP
2HD-ZIP_I/II122.61.9e-39112201191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+ +++l++en+rL++e +eL+ +l
   KFK32790.1 112 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKKYCETLTDENRRLQNEIQELK-TL 201
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.119108168IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-17109171IPR009057Homeodomain-like
SMARTSM003899.6E-16110172IPR001356Homeobox domain
SuperFamilySSF466891.71E-18110176IPR009057Homeodomain-like
PfamPF000469.6E-16112166IPR001356Homeobox domain
CDDcd000866.10E-17112169No hitNo description
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
SMARTSM003401.8E-21168211IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-9168201IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGFDDSCNTG LVLGLGLSST PNNYNNAIKR SSGSKLEPSL TLSLSGDPSV TVVAGTDQLC  60
RQASSQSGVS SFSSGRMVKR ERDGGEESPD GDETTERVIS DYHEDEEGVS ARKKLRLTKE  120
QSALLEESFK HHSTLNPKQK QVLARQLNLR PRQVEVWFQN RRARTKLKQT EVDCEILKKY  180
CETLTDENRR LQNEIQELKT LKLTHQPFYM HMPASTLTMC PSCEKIGSDG GNGGGDAGDG  240
GSVATTVIVN GGAAKGAFSM SSKPHFFNPF TNSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885765.11e-161homeobox-leucine zipper protein HAT9
SwissprotP466031e-145HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A087GSD80.0A0A087GSD8_ARAAL; Uncharacterized protein
STRINGA0A087GSD80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-139HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]