PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33032.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 211aa    MW: 24598.6 Da    PI: 4.3796
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33032.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.72.4e-1981451128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                 lp GfrF+Ptd e+ +++L+kk+ g+++++ ++ +e+ di++ +P+ Lp      e++wy+++++  ++ t   +n    + +W    + ++vl+k  +
  KFK33032.1   8 LPIGFRFRPTDYEMSHYFLTKKALGQTMKARTIPEECpDIFSRHPRALPGY--PLEEHWYYYCRKVDNQDT---TNS---HNIWILISEGTNVLDKsnN 98 
                 699***************************77777779***********43..35789*****99886654...333...357**99999999998888 PP

         NAM  97 gelvglkktLvfy...............kgrapkgektdWvmheyrl 128
                 g++vg+k+++ +                +++++++ k +W+m+e++l
  KFK33032.1  99 GQVVGIKRSFKLAeheqekeesydillsDEEEEETPKYNWFMDEFSL 145
                 999********9966666665555555447888888*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-266162IPR003441NAC domain
PROSITE profilePS5100525.7728162IPR003441NAC domain
PfamPF023652.4E-119145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEPIHRRLPI GFRFRPTDYE MSHYFLTKKA LGQTMKARTI PEECPDIFSR HPRALPGYPL  60
EEHWYYYCRK VDNQDTTNSH NIWILISEGT NVLDKSNNGQ VVGIKRSFKL AEHEQEKEES  120
YDILLSDEEE EETPKYNWFM DEFSLPLTIA DTDLVLCHVF RKKIKPEIVD LPIIESDSEE  180
EEEEEESVVA ESLNLVEEKD GSVLPPSPSP P
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191211.19e-82NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
RefseqXP_006405394.15e-81NAC domain-containing protein 104
TrEMBLA0A087GT301e-153A0A087GT30_ARAAL; Uncharacterized protein
STRINGA0A087GT301e-154(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-82NAC family protein