PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33055.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 439aa    MW: 47904.3 Da    PI: 8.5742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33055.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07119138626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+f+ + G Ck G++C+F H+
  KFK33055.1 119 CKFWKA-GNCKKGEQCPFLHS 138
                 ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-4111139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-6115138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.4E-41116434IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5010313.788118140IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5119138IPR000571Zinc finger, CCCH-type
SMARTSM003200.0023144183IPR001680WD40 repeat
SuperFamilySSF509786.71E-43145192IPR017986WD40-repeat-containing domain
PfamPF004000.066150183IPR001680WD40 repeat
PROSITE profilePS5008212.246151192IPR001680WD40 repeat
PROSITE profilePS5029418.484151355IPR017986WD40-repeat-containing domain
PROSITE patternPS006780170184IPR019775WD40 repeat, conserved site
PRINTSPR003203.6E-7170184IPR020472G-protein beta WD-40 repeat
SMARTSM0032052223260IPR001680WD40 repeat
SuperFamilySSF509786.71E-43230435IPR017986WD40-repeat-containing domain
SMARTSM003205.5E-4268306IPR001680WD40 repeat
PfamPF004000.0023273306IPR001680WD40 repeat
PROSITE profilePS5008210.208290315IPR001680WD40 repeat
PRINTSPR003203.6E-7293307IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780293307IPR019775WD40 repeat, conserved site
SMARTSM003203.6E-4309346IPR001680WD40 repeat
PfamPF004000.0037311345IPR001680WD40 repeat
PROSITE profilePS500829.272316355IPR001680WD40 repeat
PRINTSPR003203.6E-7333347IPR020472G-protein beta WD-40 repeat
SMARTSM00320300352393IPR001680WD40 repeat
SMARTSM003201396433IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNRNAPRRYT QGRNFGVQRE EDFAVDIVPR RPYGPYDNRM NNGSNKWSRN LVWTAEEGNR  60
PRKDNTNVSM KPPVLGAGYN VSNQLRKNAA YGPRSAYVSD TRGWGSSGKG SPKAQDCVCK  120
FWKAGNCKKG EQCPFLHSWC CFPGMAMVAA LEGHKKELKG IALPQGSDKL YSASIDGTLC  180
IWDCNSGQCV HTVNLQAEAG SLISEGPWVF LGLPNAVKAF NVQTSKDLHL SGVVGQVHAI  240
TIANGMLFAG TSSGSISVWK ANDTESEPFT YLTSLEGSHT GQVTCFIVGG QRLYSGSVDK  300
TIKVWDLNTL QCTLTLRQHT DTVTSLLCWD KVLISSSLDG TIKVWACSEN DSLKVTNTRR  360
LEQGVHALCG MHDAEGKPIM FCSYQNGTVS IFDLPSFEER GKMFSTNTVG TITIGPDGLL  420
FSGDKSGKLR VWSLAATKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-1613943410320Tako8
6g6n_A1e-1613943410320Tako8
6g6n_B1e-1613943410320Tako8
6g6n_C1e-1613943410320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405417.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A087GT530.0A0A087GT53_ARAAL; Uncharacterized protein
STRINGA0A087GT530.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein