PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33134.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 188aa    MW: 21822.8 Da    PI: 8.1935
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33134.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-193689356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++t eq++ Le+ Fe+++++  e++ +LAkklgL++rqV vWFqNr+a+ k
  KFK33134.1 36 KKRRLTIEQVNLLEKSFEEENKLEPERKIKLAKKLGLPQRQVAVWFQNRKARCK 89
                56689***********************************************98 PP
2HD-ZIP_I/II120.11.1e-3836125291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  kkrrl+ eqv+lLE+sFeee+kLeperK +la++Lgl +rqvavWFqnr+AR k+kq+E+dy+ Lk++yd+l +++e + +e+e+L++++
   KFK33134.1  36 KKRRLTIEQVNLLEKSFEEENKLEPERKIKLAKKLGLPQRQVAVWFQNRKARCKLKQIERDYDILKACYDSLLAKHELVISENEKLKSKV 125
                  9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.2933191IPR001356Homeobox domain
SMARTSM003899.8E-183495IPR001356Homeobox domain
SuperFamilySSF466891.04E-1736100IPR009057Homeodomain-like
PfamPF000463.1E-163689IPR001356Homeobox domain
CDDcd000864.66E-153692No hitNo description
Gene3DG3DSA:1.10.10.602.2E-193898IPR009057Homeodomain-like
PRINTSPR000311.1E-56271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000311.1E-57187IPR000047Helix-turn-helix motif
PfamPF021834.4E-1691132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDSNYNQEAS VSLENLVLVL QGTKSTGEID NQLPAKKRRL TIEQVNLLEK SFEEENKLEP  60
ERKIKLAKKL GLPQRQVAVW FQNRKARCKL KQIERDYDIL KACYDSLLAK HELVISENEK  120
LKSKVLTLTE MLPPRTNQTQ RNFQDKLSSK DNEETMSSST TLIPVANDDY HTNIDESFGW  180
WVWPSNVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590148.14e-95PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_013700742.14e-95homeobox-leucine zipper protein HAT5-like
RefseqXP_013700743.14e-95homeobox-leucine zipper protein HAT5-like
SwissprotQ022836e-42HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A087GTD21e-135A0A087GTD2_ARAAL; Uncharacterized protein
STRINGA0A087GTD21e-136(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163821113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-44homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]