PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33322.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 282aa    MW: 31419.5 Da    PI: 5.8036
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33322.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57392.44.8e-2926114497
      DUF573   4 qrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 +rl w e Dei++LqG+i+f++++g sp++d d f++fv+k+i ++v+ksq++eKir LK+K+ +++kk       sfs++h+ ++++l++ iWg
  KFK33322.1  26 RRLsWIEADEIAILQGMINFHDDKGISPYEDRDSFFKFVEKEITMDVNKSQVFEKIRGLKRKYIDNRKK------GSFSEDHEIECLGLANHIWG 114
                 6777*****************************************************************......89*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.4E-2229114IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MKRCSERTSR DVNTAKRAKS GACLSRRLSW IEADEIAILQ GMINFHDDKG ISPYEDRDSF  60
FKFVEKEITM DVNKSQVFEK IRGLKRKYID NRKKGSFSED HEIECLGLAN HIWGLDGLAL  120
DTTVKSKNDK KKNVESVQED DDVGGEESGQ KLVDEDDVLA RSGEPLAKKD QVAEKAFGKR  180
VLGEHVLANG IGGSGDKVEE DKEVGAPGGG VPDWFQKSVV FKFVASFGVA EHAIKERWSL  240
FTAESKNALE DEWKSLDSKE LEVVSQKITF MSKLAAMLAK AK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33322.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GTX00.0A0A087GTX0_ARAAL; Uncharacterized protein
STRINGA0A087GTX00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-39DNA-binding storekeeper protein-related transcriptional regulator