PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK33368.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

HD-ZIP

Protein Properties

Length: 203aa MW: 23052.1 Da PI: 9.3163

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK33368.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	69	123	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L rq+ vWFqNrRa+ k KFK33368.1 69 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 123 78889************************************************98 PP
2	HD-ZIP_I/II	118.6	3.3e-38	69	157	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ KFK33368.1 69 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 157 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-18	52	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.57E-18	58	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	65	125	IPR001356	Homeobox domain
SMART	SM00389	2.4E-17	67	129	IPR001356	Homeobox domain
CDD	cd00086	9.12E-16	68	126	No hit	No description
Pfam	PF00046	6.7E-16	69	123	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
SMART	SM00340	1.8E-21	125	168	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.4E-9	125	159	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MAILPENSSN LDLTISVPGF SSSPPSDEGS GGGREQLKLD MNRLPLSEDG VEVDGDDEEF 60 SHGGSAPPRK KLRLTREQSR LLEDSFRQNH TLNPKQKEAL AKHLMLRPRQ IEVWFQNRRA 120 RSKLKQTEME CEYLKRWFGS LTEQNHRLHR EVEELRAMKV GPTTVTSASS LTMCPRCERV 180 TTAASPSRVV PAKKKLPPQE REH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	125	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK33368.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ431181	1e-178	AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002876750.2	1e-134	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-17
Swissprot	Q8S9N6	1e-128	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A087GU16	1e-147	A0A087GU16_ARAAL; Uncharacterized protein
STRING	A0A087GU16	1e-148	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-109	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]