PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33423.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 255aa    MW: 28755.2 Da    PI: 7.093
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33423.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.2e-333184255
     G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                prlrWtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 
  KFK33423.1 31 PRLRWTPDLHRCFVNAVDMLGGPNRATPKLVLKMMDVKGLTISHVKSHLQMYRG 84
                8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1572787IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-302784IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-243184IPR006447Myb domain, plants
SuperFamilySSF466894.84E-153183IPR009057Homeodomain-like
PfamPF002491.6E-83283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGKCGGRNVN GVVFNGNGSG GVRPYVRSPV PRLRWTPDLH RCFVNAVDML GGPNRATPKL  60
VLKMMDVKGL TISHVKSHLQ MYRGSKLNLG KPEENSSSST IRRRQDSEED YYFPRNDCLL  120
GFYSHSSLIR GGRKEQTLES CNDDDDDFLH FLNLEKPKDT TTFQSLHFLK KTEKEKNNIW  180
ENTYQEQELV EEEEDLSLSL SLNQHHHQHH RRSNGSSLSE TSEAISTCSA PLVTKDCFAS  240
SPTIDLNLSI SLIGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-193286357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-193286357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-193286357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-193286357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33423.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693582.11e-109putative Myb family transcription factor At1g14600
SwissprotQ700D94e-69MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A087GU710.0A0A087GU71_ARAAL; Uncharacterized protein
STRINGA0A087GU710.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.16e-70G2-like family protein