PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33964.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 160aa    MW: 17415.1 Da    PI: 9.6724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33964.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003181103123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + Cp+Cg  F+    L  H+r+H
  KFK33964.1  81 HACPICGVEFPMGQALGGHMRRH 103
                 67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-630103No hitNo description
PfamPF139121.1E-103156IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3493259IPR007087Zinc finger, C2H2
SMARTSM003550.953254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
PfamPF139124.0E-1181104IPR007087Zinc finger, C2H2
SMARTSM003550.181103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.92881108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVARIENIDR TVEDTANCLM LLSRVGEYGR VFRCKTCMKE FTSFQALGGH RASHKKSMNE  60
HSLLSSGSGS VAKKVKTVTS HACPICGVEF PMGQALGGHM RRHRNEKESV GALVTHSLLP  120
EKATTTLKKS SSGKRVVCLD FGSESKEGLN LNLELGSSIY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33964.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591437.15e-67PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX855e-65ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A087GVR21e-113A0A087GVR2_ARAAL; Uncharacterized protein
STRINGA0A087GVR21e-114(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-59C2H2 family protein