PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK34049.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Dof

Protein Properties

Length: 434aa MW: 48018.5 Da PI: 7.5646

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK34049.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss KFK34049.1 102 PTKILPCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKTSS 162 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.7E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	106	160	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-26	108	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MMMKSRDPAV KLFGMKIPFP TVFNSPVTVE DDEEDDWSGG DDKSPHKVTP ELSDKNNNNN 60 NSNESKPESG DKEETITLTD DQIESSESPE QTADGKLILK KPTKILPCPR CKSMDTKFCY 120 YNNYNINQPR HFCKACQRYW TAGGTMRNVP VGAGRRKNKT SSSHYRHITI SEALEAARLD 180 PGLQANTRVL SFGMEAHQQH AAPATPVMKL PGDQKVSNGA RNGFHGLVDQ RLVARVENGD 240 DCSSGSSVTT SNNHSVDESR AQIVEPQMNN MNGYACIPGV PWPYTWNSAM PPPGFYPPPG 300 YPMPFYPYWT IPMVSPHQSS SPMSQKSSSP NSPTLGKHSR DEESARKDNE TERKQRNGCV 360 LVPKTLRIDD PSEAAKSSIW TTLGINHEGI SKGGMFKGFD QKTKKSNNDK VEESPALSAN 420 PAALSRSLNF HEQI

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MMMKSRDPAV KLFGMKIPFP TVFNSPVTVE DDEEDDWSGG DDKSPHKVTP ELSDKNNNNN  60
NSNESKPESG DKEETITLTD DQIESSESPE QTADGKLILK KPTKILPCPR CKSMDTKFCY  120
YNNYNINQPR HFCKACQRYW TAGGTMRNVP VGAGRRKNKT SSSHYRHITI SEALEAARLD  180
PGLQANTRVL SFGMEAHQQH AAPATPVMKL PGDQKVSNGA RNGFHGLVDQ RLVARVENGD  240
DCSSGSSVTT SNNHSVDESR AQIVEPQMNN MNGYACIPGV PWPYTWNSAM PPPGFYPPPG  300
YPMPFYPYWT IPMVSPHQSS SPMSQKSSSP NSPTLGKHSR DEESARKDNE TERKQRNGCV  360
LVPKTLRIDD PSEAAKSSIW TTLGINHEGI SKGGMFKGFD QKTKKSNNDK VEESPALSAN  420
PAALSRSLNF HEQI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK34049.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_190334.1	0.0	cycling DOF factor 3
Swissprot	Q8LFV3	0.0	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A087GVZ7	0.0	A0A087GVZ7_ARAAL; H-protein promoter binding factor-2a
STRING	A0A087GVZ7	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	0.0	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]