PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34072.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 204aa    MW: 22994.2 Da    PI: 8.997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34072.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.4e-0519611454
                HHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
         HLH 14 driNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                d+iN+   +L +llP+ a  +  s+ +s + +L++++ YI++L
  KFK34072.1 19 DQINDLVVQLHRLLPElANnRRLSGEVSASRVLQETCSYIRNL 61
                79**************5536666677789************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.623561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-41965No hitNo description
Gene3DG3DSA:4.10.280.101.7E-61965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-71979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSSRKSRSRQ SGASMISEDQ INDLVVQLHR LLPELANNRR LSGEVSASRV LQETCSYIRN  60
LNKEVDDLSE RLSQLLESTD SAQAALIRKL LKDNKAYDLI YRHCQSNLPP HFQIVSFLKN  120
GFKTPVSQAK LKAFQIYTEC VVKKNSGCVQ GGVNKEAARV EYGWCGVDKE ELKAILMYGF  180
SHNNNNGLLY LSPDNAPLQW CKVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0497462e-58AL049746.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7.
GenBankCP0026862e-58CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GW201e-150A0A087GW20_ARAAL; Uncharacterized protein
STRINGA0A087GW201e-150(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.13e-52BANQUO 3