PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34259.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 220aa    MW: 24152.2 Da    PI: 6.9178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34259.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-0584106123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ Cg+sF++   L  H  +H
  KFK34259.1  84 YKCSVCGRSFPSYQALGGHKTSH 106
                 9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-883106No hitNo description
SMARTSM003550.003884106IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-1484108IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.59684111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-8143170No hitNo description
PfamPF139124.5E-12147172IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12148170IPR007087Zinc finger, C2H2
SMARTSM003550.35148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MALDTLNSPT STTTAPPPFL TESENLESWT KRKRTKRHRT DHQHQSNPPS EEEYLALCLL  60
MLARGSDDDH SPPPPSDHHH HRDYKCSVCG RSFPSYQALG GHKTSHRKPV SNNINNNNED  120
QSTNDHNGPV TNNGNISNVL VGQSGKTHKC SICFKSFPSG QALGGHKRCH YDGGNANGNS  180
NGNNNHGFDL NLPADQVMED FNDEAFGKSQ LSGEETKSPV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34259.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469128.11e-101PREDICTED: zinc finger protein AZF1
SwissprotQ9SSW12e-66AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A087GWK71e-162A0A087GWK7_ARAAL; Uncharacterized protein
STRINGA0A087GWK71e-163(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-71C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]