PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK34290.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Dof

Protein Properties

Length: 245aa MW: 25571.3 Da PI: 8.4058

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK34290.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	3e-38	28	88	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCds+ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rk+ k+s KFK34290.1 28 QQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIGGGTRKSAKRS 88 6899****************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	4	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-33	30	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.031	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MPTSDSGESR RIAMKPHGGI TPTTEQQQQE QLPCPRCDSS NTKFCYYNNY NFSQPRHFCK 60 SCRRYWTHGG TLRDIPIGGG TRKSAKRSRT CSSSASSAVN VPLQATPVLF PPSSISNGVN 120 APLDGGGKGS ALSLCGGFTS LLNHNANATH GSGSVIGLGG FGIGLGSGFD DVSFGLGRAV 180 WPFSTVCDAA TTNVGSNGGH HGVTMPATWQ FEGLESGGNN NGGFVSGEYF AWPDLSITTP 240 GNSLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK34290.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293003.1	1e-126	dof zinc finger protein DOF3.4
Swissprot	Q39088	1e-119	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A087GWN8	1e-179	A0A087GWN8_ARAAL; Uncharacterized protein
STRING	A0A087GWN8	1e-180	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-103	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]