PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34358.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 1286aa    MW: 141711 Da    PI: 6.7981
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34358.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.8e-0712641286427
                  ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                  ++C+ f+++G+Ck G++C+F H++
  KFK34358.1 1264 KICK-FYESGYCKKGASCSFWHPQ 1286
                  6899.8999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.4E-1088140IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.33E-890143IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.68993160IPR019787Zinc finger, PHD-finger
CDDcd155681.17E-1995140No hitNo description
SMARTSM002492.7E-795141IPR001965Zinc finger, PHD-type
PROSITE patternPS01359096157IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.2E-4299389IPR019835SWIB domain
SuperFamilySSF475922.18E-20304385IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.0E-22307389IPR003121SWIB/MDM2 domain
PfamPF022016.7E-13314384IPR003121SWIB/MDM2 domain
SMARTSM007195.7E-46443552IPR004343Plus-3 domain
PROSITE profilePS5136018.64443575IPR004343Plus-3 domain
SuperFamilySSF1590421.57E-26444571IPR004343Plus-3 domain
PfamPF031264.2E-17448550IPR004343Plus-3 domain
SuperFamilySSF552779.94E-16715771IPR003169GYF domain
PROSITE profilePS5082915.586718772IPR003169GYF domain
CDDcd000721.36E-18718775No hitNo description
SMARTSM004441.2E-15719774IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.5E-16720771IPR003169GYF domain
PfamPF022131.2E-11720764IPR003169GYF domain
PROSITE profilePS5010314.2212601286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-612601285IPR000571Zinc finger, CCCH-type
SMARTSM003560.003512621286IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-512641286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-412641284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1286 aa     Download sequence    Send to blast
MENQPKRGDP ELTALGRRGE SSVRGIDLMR VDQCEEIGLT QVPALSSTVG VPGVVVDAAP  60
VKRKRGRPPK AQRQAPPQTQ VLLPPPRKEE KEEDVCFICF DGGELVLCDR RNCPKAYHPS  120
CIKRDPEFFK TKDKWNCGWH ICSICEKTSS SFMCYTCTFS VCKHCIKDAD YVIVRTNMGL  180
CGTCIKPIFL IENVAQGDNE AVTVDFDDKG SWEYLFKIYW VCLRDRLSLT VDQITRANNP  240
WKEASSTALR VESLNDHIVN KAYSSDNPTV VVAVNGTKRR TSDSPTLPNK LDAKNPSNII  300
KKRRVDTSWA TKELLEFVSL MRDGDTSFLS QFDVQGLLLD YIKKKNLRDP LQKSQVICDL  360
MLVKLFEKQR VGHFEMLKLL ESHFLIQEKP KDKKATNGET THAAPSQIEE DSVHDSPVKD  420
KRRKSRRKTD DRVPNANLDA YAAIDIHNIN LIYLRRKFLE ILLDDINKVH EQVVGTILRI  480
KVSGDQKLDI YRLVQVVGTC KATASYQLGT KTTDVMLEIL NLDKREVISI DQLSDQNVTE  540
DECKRLRQSI KCGLNKRLTV GDILKTATTL QAMRVNEVLE AEILKLNHLR DRASEKGHRK  600
ELREFVEKLE LLKSTEERQR LLDEVPEVHT DPSMDPSQAS SEDAGLGIRK QDNHITAKSK  660
GPQKKGDILN NLGNNVQKKS DAPILRSRNA VSADKDDCSK APSNSSDIQE TGKDDEDSEI  720
WHYRDPTGKI QGPFSMVQLR RWKSSGHFPP YLKIWKAHEN QDEPVLLIDA LAGRFDKAST  780
MPSSSSLPQQ VKPTPHDSGR TGADVNCLQK NPTPVNTSAT SSPSSTVGVL ANDPKEKQVE  840
ALVPSSGKVE DSNSVHLQPR VSCPASISVV PALVVTPDVT ETQGTGQSNA VRADGNHSTI  900
KTVEHGTNVG SDHAPNLNQE IHFLDFPSPT PKSSPEDLDA QAAETIQSLS SCVVVKLPSG  960
VTWSTTITPT TDAATTTSNV VVTGGQLPQV TQQNAVVLDA PSVKPIDLAV DHATTTHTSE  1020
NTQVAHSSGW PAIVADPDEC DESVSDLLAE VEAMEQNGLP SSPTSTFHCD DDDDLTKGPE  1080
KDFFNPVARM SLTPETCRMD VSQVSVLDNV SAGKISMGTE GKDNTSFSHC GTAGTELLLC  1140
APPAPASVSH DLTLTTTALR LGSETTFEAG SVERLPKSVS GVGLEPSPRS SSSHDSARGN  1200
TERSPRVSQQ KRTGGHGRDR QWWNNGHNSS FNNSHNNRQW PYSSSHGYDH GSGSYAAHPP  1260
KGLKICKFYE SGYCKKGASC SFWHPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A7e-15891631181Histone-lysine N-methyltransferase NSD3
4gnd_C7e-15891631181Histone-lysine N-methyltransferase NSD3
4gne_A7e-15891631181Histone-lysine N-methyltransferase NSD3
4gnf_A7e-15891631181Histone-lysine N-methyltransferase NSD3
4gng_A7e-15891631181Histone-lysine N-methyltransferase NSD3
4gng_D7e-15891631181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329800.0AL132980.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403953.10.0zinc finger CCCH domain-containing protein 44 isoform X1
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A087GWV60.0A0A087GWV6_ARAAL; Uncharacterized protein
STRINGA0A087GWV60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding