PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34569.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 251aa    MW: 29637.8 Da    PI: 5.7427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34569.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-171158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ v++lG ++W++ ar  g++R++k+c++rw +yl
       KFK34569.1 11 RGPWLEEEDERLVKFVNLLGERRWDSLARVSGLKRSGKSCRLRWMNYL 58
                     89********************************************97 PP
2Myb_DNA-binding50.83.8e-1665107246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+ ++eE+ +++++++++G++ W++Iar+++ gRt++++k++w++
       KFK34569.1  65 GPISQEEEMIILELHALWGNK-WSKIARRLP-GRTDNEIKNYWRT 107
                      6789*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.055662IPR017930Myb domain
SuperFamilySSF466895.47E-289105IPR009057Homeodomain-like
SMARTSM007172.1E-141060IPR001005SANT/Myb domain
PfamPF002493.9E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-211265IPR009057Homeodomain-like
CDDcd001674.15E-91358No hitNo description
SMARTSM007178.8E-1663111IPR001005SANT/Myb domain
PROSITE profilePS5129419.23563113IPR017930Myb domain
PfamPF002491.4E-1465107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2366112IPR009057Homeodomain-like
CDDcd001671.34E-966109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDCKEEETLR RGPWLEEEDE RLVKFVNLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLNP  60
NLKHGPISQE EEMIILELHA LWGNKWSKIA RRLPGRTDNE IKNYWRTNFR KKGEAHNYGK  120
HKNDVFDGDK IIGWRGNTGE EVLRKYKETE TTSKTQEHDF DEIVNKRSME SDKETNGGIC  180
ERESFGVMNS PYENRISDWI SEISTDQSEA NHFEASSSCN NENNNKNNLN IGSWWFQETR  240
DFEEFSCSLW S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2791122104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-26911256158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-26911256158MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-2791122104C-Myb DNA-Binding Domain
1msf_C6e-2791122104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34569.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172561e-109AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBankAY5195991e-109AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBankBT0052571e-109BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603906.11e-132PREDICTED: transcription factor MYB59
RefseqXP_022563629.11e-132transcription factor MYB27-like
SwissprotQ9SCP11e-128MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A087GXG70.0A0A087GXG7_ARAAL; Uncharacterized protein
STRINGA0A087GXG70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-126myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]