PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK34584.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

S1Fa-like

Protein Properties

Length: 76aa MW: 8326.1 Da PI: 10.6794

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK34584.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	130	6.6e-41	8	76	2	70
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++a++eak lnPGlivllvvg +l+vfl++ny+lyvyaqknlPP+kkkP+skkklkreklkqGv+vPGe KFK34584.1 8 GKAAAEAKRLNPGLIVLLVVGLPLVVFLIANYVLYVYAQKNLPPKKKKPISKKKLKREKLKQGVPVPGE 76 57899***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.2E-35	12	76	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MDGDDFAGKA AAEAKRLNPG LIVLLVVGLP LVVFLIANYV LYVYAQKNLP PKKKKPISKK 60 KLKREKLKQG VPVPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK34584.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF370176	3e-83	AF370176.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBank	AY059136	3e-83	AY059136.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBank	AY088845	3e-83	AY088845.1 Arabidopsis thaliana clone 97045 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600217.1	6e-24	PREDICTED: DNA-binding protein S1FA1
Refseq	XP_013730236.1	6e-24	DNA-binding protein S1FA1
Swissprot	Q42337	5e-21	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A087GXI2	2e-44	A0A087GXI2_ARAAL; Uncharacterized protein
STRING	A0A087GXI2	4e-45	(Arabis alpina)