PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK34683.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

SRS

Protein Properties

Length: 193aa MW: 21262.3 Da PI: 10.0022

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK34683.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	170.6	7.9e-53	38	182	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 +g++ C+dCGn+akk+C +eRCRtCCksrg++C thvkstW+p++ +++++++a++ ++s+rk++l+++ + +++ +++++s++e++ KFK34683.1 38 VGEKVCKDCGNRAKKECLFERCRTCCKSRGYHCVTHVKSTWIPSSSSSSQHHRTATS---------LSSSDRKKKLRIDPSDKATVLIVPTTTSRQETS 127 68899*************************************9988754333332.........333444445555666667777777788888888 PP DUF702 102 tss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +++ lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ KFK34683.1 128 FKEgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 182 7767***************9868899*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-46	40	181	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.9E-27	42	82	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.4E-29	132	180	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MLGLRNITLL PPPPPQVTKP SPVVNFSAAV VEEENSNVGE KVCKDCGNRA KKECLFERCR 60 TCCKSRGYHC VTHVKSTWIP SSSSSSQHHR TATSLSSSDR KKKLRIDPSD KATVLIVPTT 120 TSRQETSFKE GLPGKIEAPA VFKRTRVTAI SNNEQAEIGY QATVTISGHV FKGFLHYYGV 180 DHNKAFPCLS SKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK34683.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF446889	2e-86	AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
GenBank	AY052675	2e-86	AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_191011.1	7e-99	SHI-related sequence 6
Swissprot	Q9M2U4	1e-100	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	A0A087GXT1	1e-141	A0A087GXT1_ARAAL; Uncharacterized protein
STRING	A0A087GXT1	1e-141	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	9e-87	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]