PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34778.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 360aa    MW: 39160.9 Da    PI: 9.5469
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34778.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.5e-3974133362
      zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 e+alkcprCdstntkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  KFK34778.1  74 EAALKCPRCDSTNTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 133
                 6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3557126IPR003851Zinc finger, Dof-type
PfamPF027012.2E-3276131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.46977131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVFSSLPLNQ FDSNNWQQQQ GTNQQQLDRV TTNQNLNSYS PQLSSPPASQ AGSSQARVNS  60
MVERARIAKV PLPEAALKCP RCDSTNTKFC YFNNYNLTQP RHFCKTCRRY WTRGGALRNV  120
PVGGGFRRNK RSKSNGGSGG GRSKSTVVVS TDNNSTTSSI TSHPSYSNPS KFLNYGQIPG  180
FTSNLPILPP LQSLGDYNST NIGLDFGGFQ ISNAISGMSS SSGGIMDPWR MASLHQAQHF  240
PFLINNTGLE QSSNVLYPLL EGVSQADPQQ ASSDNSNQLR SKPLMNMTSS GDGATQPSNV  300
KAEENDRDQD RDVNGVNNLS RNFLGNININ STGNNEYTSW GGNSPWTGFS SNNSTGHLSF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34778.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882421.10.0dof zinc finger protein DOF3.6 isoform X1
SwissprotQ9M2U11e-173DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A087GY260.0A0A087GY26_ARAAL; Uncharacterized protein
STRINGA0A087GY260.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-139OBF-binding protein 3