PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34915.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 187aa    MW: 21188.1 Da    PI: 7.0314
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34915.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-125197354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                r+h+e+Er+RR+riNs ++ Lr llP +      K +Ka+ L k+v+ +k+L
  KFK34915.1 51 RNHKEAERKRRARINSHLSMLRNLLPCN-----SKTDKATLLAKVVQRVKEL 97
                58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0344897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.50E-1251100No hitNo description
PfamPF000109.3E-105197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1351112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-1451107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-1154103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.14E-4130187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MQQEISDQIF SSFLTRGFCS SSTTTTTTSS FYPSIIEEDT ISQDKALAAL RNHKEAERKR  60
RARINSHLSM LRNLLPCNSK TDKATLLAKV VQRVKELKQQ TLELSNESLP SETDEFSVLN  120
FDNGRTIFKV LFCCEDRPDL MQDLVETLKS LKMKTLYADM STIGGRTRNV LIVAADKEHH  180
GDDSHLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3909212e-37AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBankCP0026862e-37CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878108.13e-87putative transcription factor bHLH107
SwissprotQ9LET03e-86BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A087GYG31e-135A0A087GYG3_ARAAL; Uncharacterized protein
STRINGA0A087GYG31e-136(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]