PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK34922.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bZIP

Protein Properties

Length: 300aa MW: 32809 Da PI: 9.625

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK34922.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.4	9.6e-16	230	272	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ KFK34922.1 230 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRR 272 79***************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.5E-13	222	273	No hit	No description
SMART	SM00338	1.3E-12	226	298	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.427	228	273	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.5E-10	230	275	No hit	No description
Pfam	PF00170	1.2E-12	230	273	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.35E-23	230	284	No hit	No description
PROSITE pattern	PS00036	0	233	248	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDSQRGLVEE AKSQSLNRQG SMYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANH 60 QPMDVNGAAP QEGLSRQGSL TLPRDLSKKT VDEVWKDIQQ NKNGGNAHER RDKQPTLGEM 120 TLEDLLLKAG VVTETIPGSN HDGPGGIPGV GGGGSVGSGA ALGPNMTQVG PWVQYHQLPS 180 MPQPQAFMPY PSSEMQVMVS QSSLMGGLSD TQTPGRKRAS GEIVEKTVER RQKRMIKNRE 240 SAARSRARKQ AYTHELEIKV SRLEEENERL RRQKEVEKIL PSAPPPDPKR QLRRTSSAPF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK34922.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017162	1e-161	AB017162.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 3 (AREB3), complete cds.
GenBank	AY062448	1e-161	AY062448.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850; T8M16_180) mRNA, complete cds.
GenBank	AY081670	1e-161	AY081670.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504594.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	0.0	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A087GYH0	0.0	A0A087GYH0_ARAAL; Uncharacterized protein
STRING	A0A087GYH0	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-168	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]