PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34997.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 242aa    MW: 26885.5 Da    PI: 8.4048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34997.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.9e-06214236223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C++ F+ + +L +Hi + H
  KFK34997.1 214 VCPKCSRGFRVPGDLLKHIDKdH 236
                 7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.13E-12457No hitNo description
PROSITE profilePS510397.7221059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-101150IPR000058Zinc finger, AN1-type
PfamPF014281.0E-131349IPR000058Zinc finger, AN1-type
SMARTSM001545.2E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.1E-992146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.12E-993145No hitNo description
PROSITE profilePS510398.20798151IPR000058Zinc finger, AN1-type
PfamPF014286.6E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0031101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.954213241IPR007087Zinc finger, C2H2
PROSITE patternPS000280215236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CTQVFCLDHR SYMKHKCPKG NRGDVTVVIC  60
PLCAKGVRLN PEEDPNITWE KHVNADCDPS NYEKTIKKKK CPVPRCRESL TFSNTIKCRD  120
CSIDHCLKHR FGPDHSCPGP KKVDSSFSFM GFLSTNTKEG TVSPSSSSRW SSLLASAEAS  180
FSRLGNDIRQ FASGSDGGNV EKTQERNGKV TVDVCPKCSR GFRVPGDLLK HIDKDHRGSS  240
TA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591875.11e-151PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_013706961.11e-151zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-147SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLA0A087GYP51e-178A0A087GYP5_ARAAL; Uncharacterized protein
STRINGA0A087GYP51e-179(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-140C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]