PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35073.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family RAV
Protein Properties Length: 333aa    MW: 37659.5 Da    PI: 9.9147
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35073.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1356104155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+ +++g
  KFK35073.1  56 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAHRFRG 104
                 689***9788.8*********3.....5************************998 PP
2B397.48.9e-31177278195
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+ tpsdv+k++rlv+pk+ ae+h       ++++ +++ l +ed +g+ W+++++y+++s++yvltkGW++Fvk+++L++gD + Fk+++ ++++l
  KFK35073.1 177 FEKTVTPSDVGKLNRLVIPKHQAEKHfplplanNNVSVKGTLLNFEDVNGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNGQDQQL 275
                 99*****************************9988888999*************************************************886677767 PP

                 EEE CS
          B3  93 vvk 95 
                 +++
  KFK35073.1 276 YIG 278
                 665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-956104IPR001471AP2/ERF domain
CDDcd000181.07E-2656114No hitNo description
SuperFamilySSF541712.48E-1756114IPR016177DNA-binding domain
SMARTSM003802.4E-2757118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2057114IPR001471AP2/ERF domain
PROSITE profilePS5103219.98157112IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-38170283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-30173277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-26176270No hitNo description
PROSITE profilePS5086313.761177281IPR003340B3 DNA binding domain
SMARTSM010195.9E-25177281IPR003340B3 DNA binding domain
PfamPF023621.1E-26177278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSSVDESSAS TVSIHTTPAK ILMSSPASLY RMGSGTSVVL DPENGIEAES RKLPSSRFKG  60
VVPQPNGRWG AQIYEKHQRV WLGTFNEEEE AARAYDVAAH RFRGRDAVKN FTDSNGDYDD  120
DEDSFLNAHA KSEIVDMLRK HTYKEELEQR KRKRNGNLKE TAFITVLTGF KSAEYLFEKT  180
VTPSDVGKLN RLVIPKHQAE KHFPLPLANN NVSVKGTLLN FEDVNGKMWR FRYSYWNSSQ  240
SYVLTKGWSR FVKEKRLCAG DLISFKRSNG QDQQLYIGSK SRSGLDQVTG RVVRLFGVDI  300
SSVKSQNGVA VKEDTSEMLL LRCNKKQRVF DAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-6417328610121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644813.10.0AP2/ERF and B3 domain-containing transcription factor ARF14-like
SwissprotQ9LS061e-179RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A087GYX10.0A0A087GYX1_ARAAL; Uncharacterized protein
STRINGA0A087GYX10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-173ethylene response DNA binding factor 3