PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK35096.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

WRKY

Protein Properties

Length: 271aa MW: 30264 Da PI: 4.644

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK35096.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.7	2.7e-29	68	126	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY +Hnh+ KFK35096.1 68 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTKLMITYACDHNHP 126 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-30	59	128	IPR003657	WRKY domain
PROSITE profile	PS50811	31.502	62	128	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-25	63	128	IPR003657	WRKY domain
SMART	SM00774	2.2E-33	67	127	IPR003657	WRKY domain
Pfam	PF03106	2.1E-24	69	126	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MHRRGQESDD EEDETYNDVV PESPSSCEDS KISKPTPKKR RNVEKRVVSV PIADVEGSKS 60 RGEVYPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRV DPTKLMITYA 120 CDHNHPFPSS SNSKSHHHRT SVVLKSAKKE QTYEEDDEEE EEEEPTTVAT VVEEEPAGLD 180 LSHVDSPLLL GGCYSEIGEF GWFYDASISS SSSGSDFLDV SFSVGEEDES LFGDLGDLPD 240 CASVFRRGTV ATEEQHRRCD FGAIPFCDSS R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	45	129	6	80	Disease resistance protein RRS1
5w3x_D	2e-20	45	129	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK35096.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF421156	1e-146	AF421156.1 Arabidopsis thaliana WRKY transcription factor 69 (WRKY69) mRNA, complete cds.
GenBank	EU912413	1e-146	EU912413.1 Brassica napus WRKY69-1 transcription factor (WRKY69-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_567073.2	1e-159	WRKY DNA-binding protein 69
Swissprot	Q93WV5	1e-161	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A087GYZ4	0.0	A0A087GYZ4_ARAAL; Uncharacterized protein
STRING	A0A087GYZ5	1e-173	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	1e-146	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]