PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35266.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 615aa    MW: 68237.6 Da    PI: 4.6393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35266.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.39.9e-9226961315374
        GRAS  15 gdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege 109
                 +++ laq++Larl+++     + +++p+ R+a y+teAL++ l++           s++s+++ + ++aa+k+fse+sP+l+f ++taNq+Ile++e+ 
  KFK35266.1 269 NKKLLAQEILARLNHNlshnYNHNKTPFYRAALYITEALQSLLLQ----------DSSSSPQTLILKIAAYKAFSETSPFLQFVNFTANQTILESLERF 357
                 44559*********995432334457******************9..........334444569*********************************** PP

        GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnl 206
                 +++Hi+Dfdi++G+QW +L+q+L+   ++  sl+iT+++sp ++ ++ el+ t+e+L++fA e+gv fe+++l  + l + + + L++ + +E++aVnl
  KFK35266.1 358 DKIHIVDFDIGYGGQWSSLIQELSGGGGKNRSLKITAFVSPVTVlDEFELRFTEENLRSFAGEVGVAFEIEFLNLEVLLNQTHWPLSLVKdNEVVAVNL 456
                 **************************9**************999*****************************999999999****98777******** PP

        GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                  ++            s+ + +L+++k++sP+vvv++++ +d+ n+e+F +++++al+yy+al +sl+++    ++ ++ vEr++++++i+ +++++ ++
  KFK35266.1 457 PISSVVS--------SYLPLILRFLKEMSPNVVVCSDRSCDRnNDEPFPNGVIHALQYYMALIESLDVT---GDSSNREVERFYVQPSIKRLLMNRYRW 544
                 *955544........47788**********************99************************9...6888899******************** PP

        GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                     +e+ + Wr+ ++++GF+pv ls++++ qa++ll++  ++g+++e++   s slvl+W++++Lv+vSaW+
  KFK35266.1 545 ----MERSQPWRSVFGQCGFSPVMLSQTVEIQAEYLLQRNLMRGFHLEKRqssSTSLVLCWEKKELVAVSAWK 613
                 ....9999****************************************665558899***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.362229590IPR005202Transcription factor GRAS
PfamPF035143.4E-89269613IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MPLPFEGFLS SFSDYKINGR RREEEEEDLC FLNNGGFFSE PTSVLDSIIR SPSPLVSSST  60
TTLSSSHGGL NTVSAATTFD EMGFEDLLSS SPEQEQSILK LIMSGDVMDE MDPVSDFIGF  120
NTGSGSDPVN HNPLFGYTFP FSHPPPPEQE EKFQIPTNPD FFSVSGSSPP SKRLNSGQPG  180
SVFSNPSQPG SIFSNPSQPG SIFSNPGQSG SVFSDPGQPG SVISDPGHDP LLTPVKLEHN  240
HDQSSTLIID DLFNAAVELT GTTVHGGDNK KLLAQEILAR LNHNLSHNYN HNKTPFYRAA  300
LYITEALQSL LLQDSSSSPQ TLILKIAAYK AFSETSPFLQ FVNFTANQTI LESLERFDKI  360
HIVDFDIGYG GQWSSLIQEL SGGGGKNRSL KITAFVSPVT VLDEFELRFT EENLRSFAGE  420
VGVAFEIEFL NLEVLLNQTH WPLSLVKDNE VVAVNLPISS VVSSYLPLIL RFLKEMSPNV  480
VVCSDRSCDR NNDEPFPNGV IHALQYYMAL IESLDVTGDS SNREVERFYV QPSIKRLLMN  540
RYRWMERSQP WRSVFGQCGF SPVMLSQTVE IQAEYLLQRN LMRGFHLEKR QSSSTSLVLC  600
WEKKELVAVS AWKCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3129561339375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402563.10.0scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLA0A087GZG40.0A0A087GZG4_ARAAL; Uncharacterized protein
STRINGA0A087GZG40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]