PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35376.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 233aa    MW: 27442.4 Da    PI: 4.8119
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35376.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-183586556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +f++eq++ Le  Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  KFK35376.1 35 KRFSEEQIKSLELIFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 86
                68*************************************************9 PP
2HD-ZIP_I/II117.86e-3833124293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +++r+s+eq+k+LE  Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlEk+y+ L+++y++l+++ e ++ke+++L +el++
   KFK35376.1  33 NQKRFSEEQIKSLELIFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLEKEYNILRANYNNLATQFEIMKKEKQTLVSELQR 124
                  689************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-171890IPR009057Homeodomain-like
SMARTSM003891.0E-132592IPR001356Homeobox domain
PROSITE profilePS5007117.072888IPR001356Homeobox domain
CDDcd000861.07E-133489No hitNo description
Gene3DG3DSA:1.10.10.601.9E-183495IPR009057Homeodomain-like
PfamPF000462.5E-153586IPR001356Homeobox domain
PRINTSPR000316.7E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000316.7E-66884IPR000047Helix-turn-helix motif
PfamPF021834.9E-1588128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEDGDFFNCC FNEINSGMTM NKKKMKNKKS NHNQKRFSEE QIKSLELIFE SETRLEPRKK  60
VQLARELGLQ PRQVAIWFQN KRARWKSKQL EKEYNILRAN YNNLATQFEI MKKEKQTLVS  120
ELQRLNEEIH KSNEERHDQE CCGEQGVALS SNTESDNGKS ELEGRLNQGM IMCNDDIKTE  180
YFGFEEETNH EFMNIVEQAD DSCLTSSDNW GGFNSDSLLD QSSSNYPWWD FWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00013PBMTransfer from AT3G61890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35376.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138744.11e-136PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotQ9M2761e-120ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLA0A087GZS41e-171A0A087GZS4_ARAAL; Uncharacterized protein
STRINGA0A087GZS41e-172(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-119homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]