PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35506.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 326aa    MW: 36644.6 Da    PI: 7.8624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35506.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.7e-06326226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                k+ lC+ffa  G C  G+ C F+H+
  KFK35506.1  3 KRTLCKFFAH-GACLKGEHCEFSHD 26
                99****6666.*************5 PP
2zf-CCCH26.89.2e-093454526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                +C f++r G+C+yG+rC++ H+
  KFK35506.1 34 ICTFYQR-GICSYGSRCRYEHV 54
                7**9999.***********997 PP
3zf-CCCH192.5e-06108130326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C+ fa+ G C++G+ C+ +Hg
  KFK35506.1 108 HPICS-FAAAGDCPRGAACPHIHG 130
                 57899.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8782956IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-53155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-43453IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-63454IPR000571Zinc finger, CCCH-type
SMARTSM003560.13105131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.563105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF578507.36E-13165238No hitNo description
Gene3DG3DSA:3.30.40.109.4E-10167233IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00163173233No hitNo description
SMARTSM001845.5E-7174231IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.342174232IPR001841Zinc finger, RING-type
PfamPF000975.9E-7174231IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180198207IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.319261290IPR000571Zinc finger, CCCH-type
SMARTSM003560.37261289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSKRTLCKFF AHGACLKGEH CEFSHDWKDP SNNICTFYQR GICSYGSRCR YEHVKASRPP  60
ASSSSRPSPA SAFLPADSVP SSSLKPAWSL DQDSVDTFNP GTANPEEHPI CSFAAAGDCP  120
RGAACPHIHG NLCPTCGKRC LHPFRPQERD HHLKSCDQKH KQLQALKFSQ EIECCVCLER  180
VLSKPTPAER KFGLLTECDH AFCIACIRNW RSTSPSSGMD VNSTLRACPI CRKLSYFVVP  240
SVIWFSAPQQ KKEIIDNYRE KLRSIDCKHF NFGDGNCPFG TSCFYKHAYH DGRLEEVVLR  300
HLDAEDGQTV IAKDIRLADF LEDMHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035761e-136GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403739.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A087H0540.0A0A087H054_ARAAL; Uncharacterized protein
STRINGA0A087H0540.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-160C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]