PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK35527.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 312aa MW: 36284.6 Da PI: 5.781

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK35527.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.1	5.5e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv +yL++kv+++++el e+i+e+d+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v s k+ KFK35527.1 6 LPPGFRFHPTDEELVAYYLNRKVNDQTIEL-EIIPEIDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVES-KK 102 79**************************.99**********95334455788*********************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kktLv+ykgrap+g++t+Wvmheyrl KFK35527.1 103 VKMGMKKTLVYYKGRAPHGHRTNWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	59.279	6	154	IPR003441	NAC domain
Pfam	PF02365	1.4E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLNRKVND QTIELEIIPE IDLYKCEPWD LPEKSFLPGN 60 DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES KKVKMGMKKT LVYYKGRAPH 120 GHRTNWVMHE YRLIHHPSSS SFKESYALCR VFKKNIQIPK RKEEGDQEEE ISTSVGKEEE 180 QEEEEKKKKW RKCERESEED MESLKIASAE TSSSEGILLD EANSSSIFAL NFSSSLLDDH 240 LFSNYVPHHH ELPYHPPPLQ LQDFPQLSMS DAEIMSMDHI SKQQDFQCRD SMNGTLDEIF 300 SFSSSANFPA SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	1	154	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	1	154	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	1	154	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	1	154	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	1	154	15	168	NAC domain-containing protein 19
3swm_B	2e-55	1	154	15	168	NAC domain-containing protein 19
3swm_C	2e-55	1	154	15	168	NAC domain-containing protein 19
3swm_D	2e-55	1	154	15	168	NAC domain-containing protein 19
3swp_A	2e-55	1	154	15	168	NAC domain-containing protein 19
3swp_B	2e-55	1	154	15	168	NAC domain-containing protein 19
3swp_C	2e-55	1	154	15	168	NAC domain-containing protein 19
3swp_D	2e-55	1	154	15	168	NAC domain-containing protein 19
4dul_A	2e-55	1	154	12	165	NAC domain-containing protein 19
4dul_B	2e-55	1	154	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK35527.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392555.1	1e-166	NAC domain-containing protein 86
Refseq	XP_010462486.1	1e-166	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	2e-80	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A087H075	0.0	A0A087H075_ARAAL; Uncharacterized protein
STRING	A0A087H075	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-121	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]