PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35573.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 205aa    MW: 22009.4 Da    PI: 6.2259
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35573.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.96e-47432021167
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+++A+++s++++++aq+lL+ ls ++sp+gd+++Rl+  ft+AL+ r+ +         + +++++ ++++ +++ ++f       +f+hltaN
  KFK35573.1  43 LRRLLFTAANFISQSNFSAAQNLLSILSVNSSPYGDSTERLINLFTKALSLRIKN--------HQEQHQEDPTVATWTTMSTVFTSSVCKEQFGHLTAN 133
                 689***************************************************9........23333333346667777788999999********** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLak 167
                 qaIl+a+e + ++Hi+D+disqGlQWp+L+qaLa+R      +++pslRiTg+g+    + + l++tg+rL++
  KFK35573.1 134 QAILDATEANGALHILDLDISQGLQWPPLMQALAERYssnpnNPSPSLRITGCGR----DVTGLNQTGDRLTR 202
                 ************************************977777789**********....9***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.78517205IPR005202Transcription factor GRAS
PfamPF035142.1E-4443202IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLTSLKSSSS SSEDATTTTT TETPPPPTCL ASSSAASSAA HHLRRLLFTA ANFISQSNFS  60
AAQNLLSILS VNSSPYGDST ERLINLFTKA LSLRIKNHQE QHQEDPTVAT WTTMSTVFTS  120
SVCKEQFGHL TANQAILDAT EANGALHILD LDISQGLQWP PLMQALAERY SSNPNNPSPS  180
LRITGCGRDV TGLNQTGDRL TRSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-205120127180Protein SCARECROW
5b3h_A4e-205120126179Protein SCARECROW
5b3h_D4e-205120126179Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175954.16e-78GRAS family transcription factor
SwissprotQ9ZWC55e-79SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A087H0C11e-147A0A087H0C1_ARAAL; Uncharacterized protein
STRINGA0A087H0C11e-147(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-69GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]