PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35868.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 263aa    MW: 29837 Da    PI: 6.8094
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35868.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0593112120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  KFK35868.1  93 FSCPLCFKTFNRYNNMQMHM 112
                 89*****************9 PP
2zf-C2H213.60.0002177199123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C  Cgk F  k + ++H +++
  KFK35868.1 177 FACRRCGKAFAVKGDWRTHEKNC 199
                 78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6693120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-593112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-6159197No hitNo description
Gene3DG3DSA:3.30.160.608.5E-6163197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDTDQNSSMF LDGSHHVTVD LHLGLPSYSV DGSIGSYIAP DATTEEQDQD HDREVEVTVE  60
SHLHDDGDHG DLYRGHHYWI PTPSQILIGP TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR  120
KGPDSLRGTQ PTGMLRLPCF CCAPGCKNNI DHPRAKPLKD FRTLQTHYKR KHGSRPFACR  180
RCGKAFAVKG DWRTHEKNCG KLWYCSCGSD FKHKRSLKDH VKAFGNGHVP CGIDSFGGDH  240
EDYYEAASDI EQQDDCNNNN NEC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488109.11e-172PREDICTED: zinc finger protein WIP5-like
SwissprotQ8W0311e-159ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A087H1660.0A0A087H166_ARAAL; Uncharacterized protein
STRINGA0A087H1660.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-155WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]