PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK35873.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Trihelix

Protein Properties

Length: 123aa MW: 13481.8 Da PI: 6.1333

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK35873.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.8	4.2e-11	89	123	1	35
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevs 35 rW++qe+l L+e+r++++++++++++k+plW+evs KFK35873.1 89 RWPRQETLMLLEVRSRLDHKFKEANQKGPLWDEVS 123 8*********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MEDHQNHPQY GIPLPQPSPH FSSDLFGFNI VSGPDQHHRV QFTDHEMGFL PRGVQGLTVA 60 GPNSNTVVAS TSGGGGGFSG FTDGGETGRW PRQETLMLLE VRSRLDHKFK EANQKGPLWD 120 EVS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK35873.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630487	1e-108	AJ630487.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g10000.
GenBank	ATAC010927	1e-108	AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence.
GenBank	CP002686	1e-108	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001189853.1	5e-66	Homeodomain-like superfamily protein
Refseq	NP_187611.2	5e-66	Homeodomain-like superfamily protein
Swissprot	Q9LZS0	5e-29	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A087H171	4e-85	A0A087H171_ARAAL; Uncharacterized protein (Fragment)
STRING	A0A087H171	6e-86	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.2	2e-55	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]