PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36009.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 193aa    MW: 22023.8 Da    PI: 5.0249
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36009.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-1431121199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k+ ++s   k++++ +p +f+ ++g k   s  +t+e++ g + ++++  ++ ++++++++GW+eF++a+ +  g f+ F+++++s+f  +v++f+ 
  KFK36009.1  31 FIKIILQST-IKEKMMKIPARFV-RCGPK--FSDNVTIETPVGFKRSIRI--KRIGNEVWFENGWSEFAEAHSISKGHFLFFHYKENSSF--LVTIFDV 121
                 556665554.55567********.89844..7889***************..********************************999999..***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1924121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2025122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.64E-1429120No hitNo description
PROSITE profilePS5086311.22330122IPR003340B3 DNA binding domain
SMARTSM010193.3E-1631122IPR003340B3 DNA binding domain
PfamPF023624.0E-1233120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKTTRRSSVR NTSAASNGRL KPESEPAMKK FIKIILQSTI KEKMMKIPAR FVRCGPKFSD  60
NVTIETPVGF KRSIRIKRIG NEVWFENGWS EFAEAHSISK GHFLFFHYKE NSSFLVTIFD  120
VSAMEIDYPL DKVNVIKSDD DDDDEEKGFS GFENSDNNDS SEGVIDLDEL LKMNPRDNIK  180
SEKITLIDDD VEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500489.14e-88PREDICTED: B3 domain-containing protein At1g49475-like
SwissprotQ9XIB44e-79Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLA0A087H1K71e-138A0A087H1K7_ARAAL; Uncharacterized protein
STRINGA0A087H1K71e-138(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-79B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]