PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36037.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 452aa    MW: 52137.2 Da    PI: 5.8996
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36037.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.31.1e-20209266155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                 kpr+ Wt  LH++F++a+e  GG+ekA P  +l++   m+++gLt+++v+SHLQk+R+
  KFK36037.1 209 KPRMTWTGGLHQKFLRAIEIVGGIEKANPMLLLKClkeMNIEGLTRNNVASHLQKHRI 266
                 79***************************9876543339******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-7259IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.4E-8280No hitNo description
CDDcd001562.28E-5680No hitNo description
PfamPF000728.1E-5757IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466892.51E-12207269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-19207270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-15209266IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MQDCKHEVKV YSDAEEARAF LTTTKHKIDI VVWDFHMPKV NGLEALKIGS ERDLPVVNLV  60
QNHGLGQDND HSKTVGQGID EEEKWTEEIQ QVQSDLVQTG VLDQENYDFN TLGQGIDDKE  120
EMWTGEIQQG QSDLVQTTDV LDLEDYNFKT IDQENYVERN IDNEEEKAAK KARLMRTSYT  180
QPDLVQTNGL YRDNGEQNID KKEGKKPRKP RMTWTGGLHQ KFLRAIEIVG GIEKANPMLL  240
LKCLKEMNIE GLTRNNVASH LQKHRISLEE TRIPQQTLPI DLTSTAYRPS SLLGPSNDHF  300
GQSSAYKPSS LLAPSNDHFG QSSAYKPSSL LAPSNAHSSI PYLLNDRALN PMINQNQYPN  360
GYMAMNNNQF MKNPLPHLPS LDNHYLQPQE RQPYQFSHQM DYLMNKKEPE QYQCSHHIKH  420
QPQYQQQQYQ FPHQLDYVMH KKEPEEALWP RS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869952.12e-74LOW QUALITY PROTEIN: putative two-component response regulator ARR19
TrEMBLA0A087H1N50.0A0A087H1N5_ARAAL; Uncharacterized protein
STRINGA0A087H1N50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.21e-60response regulator 19