PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36245.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 104aa    MW: 12623.7 Da    PI: 10.402
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36245.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.83.2e-25455455
     G2-like  4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                +rW+ +LH+ Fv++veqLGG++kAtPk i elm+   Ltle++kSHLQ YR+
  KFK36245.1  4 IRWNDDLHRLFVHVVEQLGGEQKATPKPIFELMNRGELTLEQIKSHLQWYRI 55
                79*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-14459IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-21456IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-22458IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MMSIRWNDDL HRLFVHVVEQ LGGEQKATPK PIFELMNRGE LTLEQIKSHL QWYRITKQKE  60
AITNKRQENI IKQQMIQWET HQHLRLSERL LKTAELIQNQ QRLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ0J2353e-14ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A087H2931e-68A0A087H293_ARAAL; Uncharacterized protein
STRINGA0A087H2932e-69(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.11e-20G2-like family protein