PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36333.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 262aa    MW: 30055.7 Da    PI: 4.2654
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36333.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57379.94e-2592174695
      DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                 +  eeDeiv+LqG idfk ++gks ++d ++fy+fvk+s++++ s +ql+eK+r+L  K+ k v+       p+f  +hdqk+fel+k i
  KFK36333.1  92 MLIEEDEIVILQGAIDFKLDKGKSFYQDQNEFYDFVKRSLNIDLSPHQLTEKVRSLNMKYIKGVE-------PTFLDAHDQKCFELAKVI 174
                 4569********************************************************97665.......5***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-1994174IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAPLEDPPGD SSSDEGETES VEEEEANDVI EISSDSESSD SESETETDTV VVQPSVVSSS  60
RRTKQPRVEE TSTRMQTKRA KTDDEKKPYS QMLIEEDEIV ILQGAIDFKL DKGKSFYQDQ  120
NEFYDFVKRS LNIDLSPHQL TEKVRSLNMK YIKGVEPTFL DAHDQKCFEL AKVIDGLALE  180
LEKSEKIYEE DWFDKSYLVR AIASFGVSED LVKQRWSMVA METKKIIEDK WRELQAKEIE  240
FMMLKTNFLC EVTSAMAKTL NP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SYA92e-51STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A087H2I10.0A0A087H2I1_ARAAL; Uncharacterized protein
STRINGA0A087H2I10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-52DNA-binding storekeeper protein-related transcriptional regulator