PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36347.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 780aa    MW: 90213 Da    PI: 4.4442
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36347.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.34e-3244139398
      DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 ++++w+ + e+++L G++d++++++ s+ dd+da+y+f+k+si++k+sk+ql++Kir LKk+f +++ k+++gk psf++++d++if+ls++iWg+
  KFK36347.1  44 SKMIWTRNNELIILAGIVDYESEKELSYNDDWDALYNFIKGSIELKFSKKQLIDKIRGLKKRFMDNMVKSEDGKGPSFTNTEDDEIFKLSMIIWGT 139
                 789*******************************************************************************************95 PP
2DUF573842.1e-26476565498
      DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 +  w+++De  +L+G+++++++t+  + +d+daf+ f+k+si   ++k+ql +Kir+LKk+f+++ +k      psf++++d+++f+ls+ iWg+
  KFK36347.1 476 KITWTKDDEHHILKGIVKYEDETELRYRADWDAFCAFIKDSIVTIFTKEQLQSKIRKLKKRFTDNLAK-----GPSFTNSDDEEMFKLSMVIWGK 565
                 557****************************************************************9.....89******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-2545138IPR007592Protein of unknown function DUF573
PfamPF045045.9E-21478564IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MPLSSPIKRK HVDDDNEEVS GTKSRLRSRK ILKTTFLSPS SSSSKMIWTR NNELIILAGI  60
VDYESEKELS YNDDWDALYN FIKGSIELKF SKKQLIDKIR GLKKRFMDNM VKSEDGKGPS  120
FTNTEDDEIF KLSMIIWGTK SEKEFGSNEN LEQGKDVTNA DHEKINENMD QAKDVDVPYA  180
EHERISENVD QAKVDVSDAE NERVNENMDI AKKDVSCAEH DQVNESVGQA KVNKDVSYAD  240
HDQVNESMDQ AKEDVSSEEQ ERVNESVDQA KTDVEHERVS NISMEIDDDG EKEKKSKEDG  300
VDEFCALQDA FEALLFPRFG KTHQKLLLHN LKNLKAEKRR ELSDEWKALL AEEVQLHIKK  360
LTFSTKLANT LVSAQYRVNK TKARFFFTLH KISKILQKFP SLIMGSIDSD DSNTDCFEIR  420
YNDRATASSS QRTRKRVVVD EEDEEEVSDK ETKLIRKRPR RTTTTTTTLV TSPTPKITWT  480
KDDEHHILKG IVKYEDETEL RYRADWDAFC AFIKDSIVTI FTKEQLQSKI RKLKKRFTDN  540
LAKGPSFTNS DDEEMFKLSM VIWGKNNETE CDTNVNMDQS KDLALVENEQ NNENVEHEQM  600
MENDLALVEN EQNNENVEHE QMMENVEQGK EDLTNVEDEQ ITENVAQEED ATYVEDEHIT  660
ENMAQEEDLT NVEQDQRNVN VEQAEDATHV EREQINENVE QVMVDDGEKV GEEEFCLLQD  720
AFEMTLFPKL DQAHQKLLLQ NLRNMKADKG KELCEEWNEL LLEEIRFNIN KVTYAAKLSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333339LKAEKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36347.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087H2J50.0A0A087H2J5_ARAAL; Uncharacterized protein
STRINGA0A087H2J50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.19e-60DNA-binding storekeeper protein-related transcriptional regulator