PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK36360.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

GeBP

Protein Properties

Length: 520aa MW: 59526 Da PI: 5.5596

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK36360.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	87	2.4e-27	234	325	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++++w+e+De+++L+ l df++++g + d+d+fy+++k+s+s++v+k+ +++Kir+LK+Kf + + +k+gk+p+f+++ d +++++s +Wg KFK36360.1 234 SRKIWNEDDELIILKELADFRSEEG---VVDWDEFYKIIKGSLSVQVTKEKVLSKIRKLKRKFLANTESIKQGKDPNFTRSTDFEAYKYSLTLWG 325 679********************...67**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12507	2.0E-43	22	142	IPR021042	Herpesvirus UL139, cytomegalovirus
Pfam	PF04504	8.0E-22	235	325	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MALSAAFKER LDQMEFTRNQ RLYLLQVEKE IQVNKSQILA SKHASIQSIE RKCLILDQKI 60 AAQNLKITIL KSTIEDLDSK YHCSVQQLRT LKSEVEELKE LDKERDKYYK LKCSEMNEFM 120 QNVEKFLSEK RLQVENLRER IKELSSTFKD PLSLHITPRF LIFGNQQMTT PKRLDFSSHG 180 VDGDDNESDG DCPPLSTSRR QSLRQAALKR PASVSPVAEE PKKKKKKKKS ASSSRKIWNE 240 DDELIILKEL ADFRSEEGVV DWDEFYKIIK GSLSVQVTKE KVLSKIRKLK RKFLANTESI 300 KQGKDPNFTR STDFEAYKYS LTLWGENDSE NGEDDQENAN AELVNGNEAA RINTDENPID 360 ELENKTAGKE LYDNEAGNSN SLQELIKENE TFGKETHDNK AGTENMTFGK MSHDNEAGTS 420 NGVAKQLQQV AADKSTENKT VVTESDDEEL CAIRDAFETM MAHGLTDYQK SVELKRLMNL 480 GAEKRKEFSD GWNKLLDWER TLKMKRLEFS AKLAEATLDG

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MALSAAFKER LDQMEFTRNQ RLYLLQVEKE IQVNKSQILA SKHASIQSIE RKCLILDQKI  60
AAQNLKITIL KSTIEDLDSK YHCSVQQLRT LKSEVEELKE LDKERDKYYK LKCSEMNEFM  120
QNVEKFLSEK RLQVENLRER IKELSSTFKD PLSLHITPRF LIFGNQQMTT PKRLDFSSHG  180
VDGDDNESDG DCPPLSTSRR QSLRQAALKR PASVSPVAEE PKKKKKKKKS ASSSRKIWNE  240
DDELIILKEL ADFRSEEGVV DWDEFYKIIK GSLSVQVTKE KVLSKIRKLK RKFLANTESI  300
KQGKDPNFTR STDFEAYKYS LTLWGENDSE NGEDDQENAN AELVNGNEAA RINTDENPID  360
ELENKTAGKE LYDNEAGNSN SLQELIKENE TFGKETHDNK AGTENMTFGK MSHDNEAGTS  420
NGVAKQLQQV AADKSTENKT VVTESDDEEL CAIRDAFETM MAHGLTDYQK SVELKRLMNL  480
GAEKRKEFSD GWNKLLDWER TLKMKRLEFS AKLAEATLDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	228	KKKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK36360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A087H2K8	0.0	A0A087H2K8_ARAAL; Uncharacterized protein
STRING	A0A087H2K8	0.0	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	5e-56	DNA-binding storekeeper protein-related transcriptional regulator