PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36373.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-YA
Protein Properties Length: 195aa    MW: 21975.3 Da    PI: 8.6411
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36373.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.39.4e-3294150158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep++VNaKQy++Il+RRq+Rakle++++  +k++kpylheSRh hA+rRpRg+gGrF
  KFK36373.1  94 EEPVFVNAKQYHGILRRRQSRAKLESRNRA-IKAKKPYLHESRHLHAIRRPRGCGGRF 150
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.2E-3592153IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.46293153IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-2695150IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-2496118IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686098118IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-24127150IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MTSSVHELSD NNGKQERPDS QTRPQVTSGP SSESVDANSV YSEPMAHGLY PYPDPYYRSV  60
FAHQAYLPHP YPGVQLQLMG MQQQGVPLQC DTIEEPVFVN AKQYHGILRR RQSRAKLESR  120
NRAIKAKKPY LHESRHLHAI RRPRGCGGRF LNAKKKNGEH KEEEDEEDAT SDENTSEASS  180
SLRSEKSAMA PNGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2093163171NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36373.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0724141e-180AY072414.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
GenBankAY1147111e-180AY114711.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850235.11e-124nuclear factor Y, subunit A4
SwissprotQ8VY641e-125NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLA0A087H2M11e-143A0A087H2M1_ARAAL; Nuclear transcription factor y subunit a-7
STRINGA0A087H2M11e-144(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.17e-86nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]