PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK36384.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

WRKY

Protein Properties

Length: 415aa MW: 44977.4 Da PI: 6.0518

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK36384.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.9	6.5e-31	220	278	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ KFK36384.1 220 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 278 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-31	213	280	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	214	280	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-26	217	280	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	219	279	IPR003657	WRKY domain
Pfam	PF03106	8.5E-26	221	278	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MDNFQGDLTD VVRGIGSGQV STSPGPPEGP PPAPRTSDLQ VDLPSATAPS CHTNPFGDPF 60 VSMTDPLLRL TANSGYFSGA GDENKSNNSF AIFPKVFDND HIKGQCSVFP RIRISQSNII 120 HDDSTCNSPA MGTQGTTAAV SAAAVASPWG MINVDTTNSP RNCLLVDNSN NTLSSSQIQI 180 SSSSPRNLGI KRRKSQAKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR 240 GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSTSSPSSNP 300 SSKSATASSK VSQKNNKTHL PSSSTHPPHY TVKEEDMEER QDNMEFDKDF DDTYRPELFQ 360 HQPEDFFADL DELEGDSLTM LLSQGFAGDS SGGGSLENKN VFSDFFDDDD SSRSL

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MDNFQGDLTD VVRGIGSGQV STSPGPPEGP PPAPRTSDLQ VDLPSATAPS CHTNPFGDPF  60
VSMTDPLLRL TANSGYFSGA GDENKSNNSF AIFPKVFDND HIKGQCSVFP RIRISQSNII  120
HDDSTCNSPA MGTQGTTAAV SAAAVASPWG MINVDTTNSP RNCLLVDNSN NTLSSSQIQI  180
SSSSPRNLGI KRRKSQAKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR  240
GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSTSSPSSNP  300
SSKSATASSK VSQKNNKTHL PSSSTHPPHY TVKEEDMEER QDNMEFDKDF DDTYRPELFQ  360
HQPEDFFADL DELEGDSLTM LLSQGFAGDS SGGGSLENKN VFSDFFDDDD SSRSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-26	194	281	2	80	Disease resistance protein RRS1
5w3x_D	9e-26	194	281	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK36384.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF404863	0.0	AF404863.1 Arabidopsis thaliana WRKY transcription factor 35 (WRKY35) mRNA, complete cds.
GenBank	BT029239	0.0	BT029239.1 Arabidopsis thaliana At2g34830 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504968.1	0.0	PREDICTED: probable WRKY transcription factor 35
Swissprot	O64747	0.0	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A087H2N2	0.0	A0A087H2N2_ARAAL; Uncharacterized protein
STRING	A0A087H2N2	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	0.0	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]