PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36443.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 291aa    MW: 32537.4 Da    PI: 4.8586
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36443.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.41.2e-101360450
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50
                e k++r+  f +R  g  KKA ELSvLC+  v  i +++++  l+ ++
  KFK36443.1 13 EKKRKRSSYFKQRYPGFKKKATELSVLCGNSVGFICYGPDNdSLHVWP 60
                778999999999**************************9872577776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.143253IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-13782IPR002100Transcription factor, MADS-box
PfamPF003191.3E-101357IPR002100Transcription factor, MADS-box
CDDcd002661.72E-181387No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAPRENKPSD DLEKKRKRSS YFKQRYPGFK KKATELSVLC GNSVGFICYG PDNDSLHVWP  60
ENPQTLDKLV AKFDVQSDLK RKRHGCDLND FPHFEGLSVE ELMTHLSHLN SHLLGVQNKK  120
LQILTKTIKA SSKDHRPRVG EIGVGTDAEK LESEDHVKVS DTKLGFGGAF EDLGYVVRGS  180
TTSLDATVSD FQPRDDVESQ LYPIPEHNAS VGMETQDYSG ILDPLALGFA GDDSQLYPDP  240
FTFPMGIWDM DLSSTLADSF MTTTTCQTPI TDDWGNLQAF QTQPFLWEPL S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026849e-31CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT2K109e-31AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176212.11e-70AGAMOUS-like 49
SwissprotQ9ZUI99e-72AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLA0A087H2U10.0A0A087H2U1_ARAAL; Uncharacterized protein
STRINGA0A087H2U10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.16e-69AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]