PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36449.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 299aa    MW: 32834.3 Da    PI: 8.2578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36449.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-067398126
                --S---SGGGGTS--TTTTT.-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdr.CkFaHg 26
                +kt+lC+ f++ GtC+y ++ C+FaH+
  KFK36449.1 73 FKTKLCCKFRA-GTCPYVANlCHFAHS 98
                69*********.******988*****8 PP
2zf-CCCH43.17e-14191216126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  KFK36449.1 191 WKTRICNKWEITGYCPFGANCHFAHG 216
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-1369105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-571104IPR000571Zinc finger, CCCH-type
SMARTSM003560.0727299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.24472100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-7127155IPR000571Zinc finger, CCCH-type
SMARTSM003561128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192128156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6128155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-17184220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-10186221IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-9190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244190218IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-11191216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSHRRDSGSD AVQIPTNDPP PENRFPIPSD NSVWATEDDY NRIGTVNTDD TESPSKKTRG  60
SSSSSSGIGK SFFKTKLCCK FRAGTCPYVA NLCHFAHSSE ELRRPSNRKE TVAETREEFK  120
IPAESGRLYK GRHCKKFYGG EGCTYGESCT FVHDEASRNR ESFVISLGSR GGYGAASDGG  180
NVVQIVKPSN WKTRICNKWE ITGYCPFGAN CHFAHGAAEL HNFGGGLLKE EEKIGASATQ  240
DTKQTGQAET VTSIVSPGVP SQRTSSAVTQ YPNGVRIQRK WKGPDKISRV YGDWIDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410700.11e-175zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-119C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A087H2U70.0A0A087H2U7_ARAAL; Uncharacterized protein
STRINGA0A087H2U70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-106C3H family protein