PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36467.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 190aa    MW: 21238.6 Da    PI: 5.3272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36467.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-184493255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  KFK36467.1 44 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALAIKG 93
                59****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-3944107IPR001471AP2/ERF domain
PROSITE profilePS5103222.72144101IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2144102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3144102IPR001471AP2/ERF domain
PfamPF008477.7E-124593IPR001471AP2/ERF domain
PRINTSPR003676.3E-104556IPR001471AP2/ERF domain
CDDcd000181.68E-3345103No hitNo description
PRINTSPR003676.3E-106783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEHSRRFQDP PEQTTERTVT NTNSKKKRAK DDDEERVMVP KHPTFRGVRM RQWGKWVSEI  60
REPKKKSRIW LGTFPTPEMA ARAHDVAALA IKGGSAHLNF PELAYHLPRP ASADPKDIQA  120
AAAAAAVADM EVETSSPSST STEISSPVMN AIADDAFSDL PDLLLDVNHT NDGFWDSFPN  180
DEEPFFSQSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1632101272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295043.15e-99ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP31e-87ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A087H2W51e-137A0A087H2W5_ARAAL; Uncharacterized protein
STRINGA0A087H2W51e-138(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-77ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]