PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK36538.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

HD-ZIP

Protein Properties

Length: 184aa MW: 21958.8 Da PI: 7.1635

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK36538.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	75	130	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +k+ ++t+eql+ Le+ F+++++++ +++ +L+k+l+L+ rq+ vWFqNr+a++k+ KFK36538.1 75 KKKKKMTSEQLKLLERSFQEEMKLDPDRKMKLSKELSLQPRQIAVWFQNRKARWKN 130 78999*************************************************95 PP
2	HD-ZIP_I/II	108.3	5.6e-35	75	166	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+++++eq+klLE+sF+ee kL+p+rK++l++eL lqprq+avWFqnr+AR+k+k+lE+ ye+L++++d +++e+ L++e +L++ ++ KFK36538.1 75 KKKKKMTSEQLKLLERSFQEEMKLDPDRKMKLSKELSLQPRQIAVWFQNRKARWKNKKLEHLYESLRQEFDVISREKMLLQEELMQLKSMID 166 59**************************************************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-19	56	133	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	71	131	IPR001356	Homeobox domain
SMART	SM00389	1.5E-17	73	135	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-16	75	130	IPR001356	Homeobox domain
CDD	cd00086	1.17E-15	75	132	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-20	77	138	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEYWSSSFMN VDSSSNFIYP FYNSDHFSGN QDNKCLSSGA MLDAQEGLLH EHHVPLTMVE 60 NVYGEESNNI YGHEKKKKKM TSEQLKLLER SFQEEMKLDP DRKMKLSKEL SLQPRQIAVW 120 FQNRKARWKN KKLEHLYESL RQEFDVISRE KMLLQEELMQ LKSMIDESSS SKRKQTRDNF 180 INYD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00049	PBM	Transfer from AT2G36610	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK36538.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295077.1	8e-95	homeobox-leucine zipper protein ATHB-22
Swissprot	Q4PSR7	2e-91	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	A0A087H336	1e-133	A0A087H336_ARAAL; Uncharacterized protein
STRING	A0A087H336	1e-133	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	4e-77	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]