PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36580.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 210aa    MW: 23190.1 Da    PI: 8.725
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36580.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1103.6e-34381356102
         TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....kaaksaakskk 99 
                 + ++++hTkv gR+RRvR++a+ aar+F+L++eLG+++d++tieWLl++a+ +i+++tgt++ +++     sss+ +s + ++     + ++ ++ + +
  KFK36580.1  38 RITKDRHTKVYGRGRRVRMPALAAARIFQLTRELGHKSDGETIEWLLRKAESSIIAATGTGTVPSEPI---SSSVGSS-PPEPlpvlfAPQTLTQLQTQ 132
                 569*********************************************************88888444...2222222.12224455422222222222 PP

         TCP 100 sqk 102
                 +q+
  KFK36580.1 133 TQT 135
                 222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-2940116IPR005333Transcription factor, TCP
PROSITE profilePS5136926.084094IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSTEMVFHKL HTTESNLNTI TPESRSQTQI VKSATGGRIT KDRHTKVYGR GRRVRMPALA  60
AARIFQLTRE LGHKSDGETI EWLLRKAESS IIAATGTGTV PSEPISSSVG SSPPEPLPVL  120
FAPQTLTQLQ TQTQTQTQQT LFSETPSCRL DLSQPIGVHY SVNGGGGYNH MPYTAMLFEP  180
MNTTVESGGE ITAEERRMKE VVENCRRHHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410877.27e-74transcription factor TCP11
SwissprotQ9SJK74e-54TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A087H3781e-153A0A087H378_ARAAL; Uncharacterized protein
STRINGA0A087H3781e-154(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-52TCP family protein