PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36602.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family S1Fa-like
Protein Properties Length: 69aa    MW: 7565.28 Da    PI: 10.9675
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36602.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA115.81.7e-36969363
        S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkq 63
                +a veakGlnPGlivllvvgglll+fl++ny++y+yaqknlPP+kkkP skkklkreklk+
  KFK36602.1  9 KAVVEAKGLNPGLIVLLVVGGLLLTFLIANYVMYMYAQKNLPPKKKKPHSKKKLKREKLKK 69
                7889*******************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.6E-321369IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MSGEGSAGKA VVEAKGLNPG LIVLLVVGGL LLTFLIANYV MYMYAQKNLP PKKKKPHSKK  60
KLKREKLKK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3728921e-69AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds.
GenBankAY0854391e-69AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence.
GenBankBT0026691e-69BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565859.16e-24S1FA-like DNA-binding protein
SwissprotQ423375e-25S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A087H3A02e-39A0A087H3A0_ARAAL; Uncharacterized protein
STRINGA0A087H3A04e-40(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.14e-08S1FA-like DNA-binding protein